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Table 2 Nucleotide and allelic diversity in 11 housekeeping gene fragments

From: The evolution and population structure of Lactobacillus fermentum from different naturally fermented products as determined by multilocus sequence typing (MLST)

Locus

Number of

Mean G + C content (mol%)

Pi 1

d N /d S 2

Alleles

Polymorphic sites

clpX

11

11

53.24

0.00634

0

dnaA

9

12

48.26

0.01421

0

dnaK

12

13

56.5

0.0061

0

groEL

7

6

51.91

0.00416

0.2188

murC

12

12

55.16

0.00393

0.0812

murE

11

14

54.86

0.00768

0.0424

pepX

19

22

60.44

0.00769

0.2548

pyrG

10

10

54.61

0.0056

0.128

recA

12

11

56.27

0.00408

0

rpoB

11

7

52.63

0.00514

0.0683

uvrC

11

13

52.98

0.00618

0.1714

  1. 1 Mean pairwise nucleotide differences per site
  2. 2 d N /d S  = the ratio of nonsynonymous to synonymous substitutions