Table 1 Enrichment pathway analysis of DEGs in P. italicum
Pathway | CK vs. PEA1a | CK vs. PEA3b | Common DGEc | Pathway IDd |
|---|---|---|---|---|
(1294e) (up-regulated) | (1291) (up-regulated) | (884) (up-regulated) | ||
Ribosome | 101 (0) | 83 (4) | 79 (0) | ko03010 |
Val, Leu, and Ile biosynthesis | 24 (4) | 22 (4) | 19 (3) | ko00290 |
Phe, Tyr, and Trp biosynthesis | 19 (2) | 23 (7) | 17 (2) | ko00400 |
Aminoacyl-tRNA biosynthesis | 26 (2) | 23 (4) | 20 (2) | ko00970 |
Cell cycle | 48 (4) | 45 (9) | 33 (3) | ko04111 |
Protein processing in endoplasmic reticulum | 39 (19) | 32 (26) | 19(14) | ko04141 |
RNA polymerase | 13 (0) | 8 (2) | 6 (0) | ko03020 |
DNA replication | 22 (1) | 14 (2) | 11 (1) | ko03030 |
Phosphatidylinositol signaling system | 13(12) | 11 (11) | 8 (8) | ko04070 |
Meiosis | 46 (9) | 47 (17) | 34 (8) | ko04113 |
Phagosome | 10 (5) | 11 (8) | 6 (3) | ko04145 |
Endocytosis | 13 (9) | 16 (14) | 7 (6) | ko04144 |
Phenylalanine metabolism | 15 (5) | 16 (8) | 11 (5) | ko00360 |
Proteasome | 3 (3) | 17 (17) | 3 (3) | ko03050 |
Fatty acid metabolism | 28 (25) | 36 (33) | 20 (15) | ko00071 |
Peroxisome | 24 (15) | 35 (27) | 19 (14) | ko04146 |
Regulation of autophagy | 9 (8) | 5 (4) | 4 (4) | ko04140 |