From: Short hairpin RNA-mediated knockdown of protein expression in Entamoeba histolytica
Name | Sequence | Location in mRNA/cDNA (bp from ATG) | Total length of target mRNA (bp) |
---|---|---|---|
Igl1 (272–300) | AAGTAAATACATCATCACACTCTGGAAAT | 272–300 (Igl1) | 3306 (Igl1), 3318 (Igl2) |
Igl (1198–1226) | AATGGACTTACATTGAATGGAACTCATTG | 1198–1226 (Igl1) |  |
Igl (2412–2440) | AACAGAATGTTCAGATGGTTTTAGTGGAC | 2412–2440 (Igl1) |  |
Igl (2777–2805) | AAGGAACATGTATACCATGCACATCACCA | 2777–2805 (Igl1) |  |
URE3-BP (350–378) | AACTTGCATACAATCTCTTCGTTATGAAC | 350–378 | 663 |
URE3-BP (580–608) | AATCCATACTATGGTCCAATGAAACCATT | 580–608 |  |
EhC2A (363–391) | AATGGTTCCACCAATGCAACCAGGCATGA | 363–391 | 567 |
EhC2A (502–530) | GCTTACCCACCACCTGGATATCCACCAA | 502–530; also 406–434 |  |
EhC2A (363–391 scrambled) | AAGGCTAGACAATCCAGACCGTTCCAGAT | Does not match any E. histolytica mRNA | None |
GFP | AAGGTGATGCAACATACGGAAAAC | Does not match any E. histolytica mRNA | None |