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Table 1 Comparison of CoreExtractor and CoreGenes and the classification of fully sequenced members of the Myoviridae

From: Classification of Myoviridae bacteriophages using protein sequence similarity

I. TEEQUATROVIRINAE

Percent identity

1. The T4-like viruses

Accession No.

CoreExtractor

CoreGenes

 

T4-type phages

   
 

Escherichia phage T4

NC_000866

100

100.0

 

Escherichia phage JS10

NC_012741

Not determined

72.7

 

Escherichia phage JS98

NC_010105

77

74.1

 

Escherichia phage RB14

NC_012638

Not determined

83.5

 

Escherichia phage RB32

NC_008515

88

84.2

 

Escherichia phage RB51

NC_012635

Not determined

85.6

 

Escherichia phage RB69

NC_004928

73

73.4

 

44RR2.8-type phages

   
 

Aeromonas phage 44RR2.8t

NC_005135

100

100.0

 

Escherichia phage 31

NC_007022

98

97.6

 

Aeromonas phage 25

NC_008208

82

82.5

 

RB43-type phages

   
 

Escherichia phage RB43

NC_007023

100

100.0

 

Escherichia phage RB16

Tulane

Not determined

84.2

 

RB49-type phages

   
 

Escherichia phage RB49

NC_005066

100

100.0

 

Escherichia phage JSE

NC_012740

Not determined

93.6

 

Escherichia phage φ1

NC_009821

97

97.1

2. The KVP40-like viruses

 

Vibrio phage KVP40

NC_005083

100

100.0

 

Vibrio phage nt-1

Tulane

Not determined

80.8

 

Acinetobacter phage 133

Tulane

Not determined

39.9

 

Aeromonas phage Aeh1

NC_005260

28

35.6

 

Aeromonas phage 65

Tulane

Not determined

34.9

II PEDUOVIRINAE

1. The P2-like viruses

 

Enterobacteria phage P2

NC_001895

100

100.0

 

Enterobacteria phage Wφ

NC_005056

89

90.7

 

Yersinia phage L-413C

NC_004745

95

88.4

 

Enterobacteria phage 186

NC_001317

72

74.4

 

Enterobacteria phage PsP3

NC_005340

70

72.1

 

Salmonella Fels-2

NC_010463

65

67.4

 

Salmonella SopEφ

AY319521

Not determined

62.8

 

Burkholderia phage φE202

NC_009234

51

55.8

 

Mannheimia phage φ-MhaA1-PHL101

NC_008201

51

55.8

 

Pseudomonas phage φCTX

NC_003278

53

53.5

 

Burkholderia phage φ52237

NC_007145

49

51.2

 

Ralstonia phage RSA1

NC_009382

49

51.2

 

Burkholderia phage φE12-2

NC_009236

49

48.8

2. The HP1-like viruses

 

Haemophilus phage HP1

NC_001697

100

100.0

 

Haemophilus phage HP2

NC_003315

97

85.7

 

Pasteurella phage F108

NC_008193

57

59.5

 

Vibrio phage K139

NC_003313

51

54.8

 

Vibrio phage κ

NC_010275

49

54.8

 

Aeromonas phage ΦO18P

NC_009542

44

50.0

III. SPOUNAVIRINAE

1. The SPO1-like viruses

 

Bacillus phage SPO1

NC_011421

100

100.0

2. The Twort-like viruses

 

Staphylococcus phage Twort

NC_007021

100

100.0

 

Staphylococcus phage K

NC_005880

74

43.5

 

Staphylococcus phage G1

NC_007066

97

56.9

 

Listeria phage P100

NC_007610

51

34.8

 

Listeria phage A511

NC_009811

51

35.4

 

Peripherally related:

   
 

Enterococcus phage φEC24C

NC_009904

32

31.8

 

Lactobacillus phage LP65

NC_006565

25

26.2

OTHER ICTV-RECOGNIZED GENERA

1. The Mu-like viruses

 

Enterobacteria phage Mu

NC_000929

100

100.0

2. The P1-like viruses

 

Escherichia phage P1

NC_005856

100

100.0

 

Escherichia phage P7

AF503408

Not determined

87.3

PROPOSED GENERA WITHIN THE MYOVIRIDAE

1. The Bcep781-like viruses

 

Burkholderia phage Bcep781

NC_004333

100

100.0

 

Burkholderia phage Bcep43

NC_005342

98

95.5

 

Burkholderia phage Bcep1

NC_005263

85

90.9

 

Burkholderia phage BcepNY3

NC_009604

87

92.4

 

Xanthomonas phage OP2

NC_007710

52

50.0

2. The BcepMu-like viruses

 

Burkholderia phage BcepMu

NC_005882

100

100.0

 

Burkholderia phage φE255

NC_009237

89

86.8

3. The FelixO1-like viruses

 

Salmonella phage Felix O1

NC_005282

100

100.0

 

Escherichia phage wV8

EU877232

Not determined

92.4

 

Erwinia phage φEa21-4

NC_011811

Not determined

52.7

4. The HAP1-like viruses

 

Halomonas phage φHAP-1

NC_010342

100

100.0

 

Vibrio phage VP882

NC_009016

Not determined

73.9

5. The Bzx1-like viruses

 

Mycobacterium phage Bzx1

NC_004687

100

100.0

 

Mycobacterium phage Catera

NC_008207

95

95.4

 

Mycobacterium phage Cali

NC_011271

92

93.6

 

Mycobacterium phage ScottMcG

NC_011269

93

94.5

 

Mycobacterium phage Rizal

NC_011272

95

95.9

 

Mycobacterium phage Spud

NC_011270

97

98.2

 

Mycobacterium phage Myrna

NC_011273

39

46.3

6. The phiCD119-like viruses

 

Clostridium phage ΦCD119

NC_007917

Not determined

100.0

 

Clostridium phage ΦCD2

NC_009231

Not determined

50.6

 

Clostridium phage ΦCD27

NC_011398

Not determined

36.7

7. The phiKZ-like viruses

 

Pseudomonas phage φKZ

NC_004629

100

100.0

 

Pseudomonas phage 201φ2-1

NC_010821

50

51.0

Peripherally related:

 

Pseudomonas phage EL

NC_007623

30

21.9

8. The PB1-like viruses

 

Pseudomonas phage PB1

NC_011810

Not determined

100.0

 

Pseudomonas phage F8

NC_007810

Not determined

95.7

 

Pseudomonas phage LBL3

NC_011165

97

89.2

 

Pseudomonas phage LMA2

NC_011166

97

95.7

 

Pseudomonas phage SN

NC_011756

Not determined

92.5

 

Pseudomonas phage 14-1

NC_011703

Not determined

92.5

 

Burkholderia phage BcepF1

NC_009015

44

43.0

Peripherally related:

 

Burkholderia phage BcepB1A

NC_005886

22

24.7

PRELIMINARY GROUPINGS AND UNRELATED PHAGES

(cyanomyoviridae)

 

Synechococcus S-PM2

NC_006820

100

100.0

 

Synechococcus Syn9

NC_008296

41

41.5

 

Prochlorococcus phage P-SSM2

NC_006883

35

40.3

 

Prochlorococcus phage P-SSM4

NC_006884

35

39.8

(phage SfV and relatives)

 

Shigella phage SfV

NC_003444

100

100.0

 

Escherichia phage P27

NC_003356

42

43.1

Aggregatibacter phage Aaφ23

NC_004827

100

100.0

Clostridium phage c-st

NC_007581

100

100.0

Escherichia phage rV5

NC_011041

100

100.0

Escherichia phage P4

NC_001609

100

100.0

Escherichia phage φEcoM-GJ1

NC_010106

100

100.0

Iodobacteriophage phiPLPE

NC_011142

100

100.0

Lactobacillus phage Lb338-1

NC_012530

100

100

Microcystis phage Ma-LMM01

NC_008562

100

100.0

Natrialba phage φCh1

NC_004084

100

100.0

Ralstonia phage RSL1

NC_010811

100

100.0

Rhodothermus phage RM378

NC_004735

100

100.0

Streptococcus phage EJ-1

NC_005294

100

100.0

Thermus phage φYS40

NC_008584

100

100.0