Table 3 Nucleotide (upper right) and deduced amino acid (lower left) sequence similarities (%) of full-length cadF (-like) gene in C. lari isolates and other thermo- philic Campylobacter reference strains
| Â | Campylobacter | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | C. lari JCM2530T | Â | 99.2 | 99.2 | 99.3 | 92.8 | 92.4 | 92.3 | 92.6 | 91.9 | 90.1 | 91.0 | 89.4 | 89.4 | 89.5 | 89.9 | 89.5 | 99.1 | 68.7 | 68.5 | 65.8 | 65.0 |
2 | C. lari 298 | 98.8 | Â | 99.8 | 99.9 | 92.9 | 92.5 | 92.4 | 92.7 | 92.0 | 90.0 | 91.2 | 89.4 | 89.4 | 89.5 | 89.9 | 89.5 | 99.8 | 68.8 | 68.6 | 65.8 | 65.4 |
3 | C. lari 300 | 99.1 | 99.7 | Â | 99.9 | 92.9 | 92.5 | 92.4 | 92.7 | 92.0 | 90.0 | 91.2 | 89.4 | 89.4 | 89.5 | 89.9 | 89.5 | 100.0 | 68.8 | 68.6 | 65.8 | 65.6 |
4 | C. lari 84C-1 | 99.1 | 99.7 | 100.0 | Â | 93.0 | 92.6 | 92.5 | 92.8 | 92.1 | 90.1 | 91.3 | 89.5 | 89.5 | 89.6 | 90.0 | 89.6 | 99.9 | 68.9 | 68.7 | 65.9 | 65.5 |
5 | UPTC 99 | 93.0 | 93.0 | 93.3 | 93.3 | Â | 98.6 | 98.6 | 99.6 | 99.0 | 92.4 | 94.5 | 91.0 | 91.0 | 91.0 | 91.1 | 90.9 | 92.9 | 69.2 | 69.0 | 66.2 | 65.3 |
6 | UPTC NCTC12892 | 93.0 | 93.0 | 93.3 | 93.3 | 99.1 | Â | 99.4 | 98.1 | 97.5 | 92.1 | 94.0 | 90.9 | 90.9 | 90.9 | 91.0 | 90.8 | 92.5 | 68.9 | 68.7 | 65.7 | 65.4 |
7 | UPTC NCTC12893 | 92.7 | 92.7 | 93.0 | 93.0 | 98.8 | 99.1 | Â | 98.1 | 97.7 | 92.1 | 94.1 | 90.9 | 90.9 | 90.9 | 91.0 | 90.8 | 92.4 | 69.1 | 68.9 | 65.9 | 65.3 |
8 | UPTC NCTC12894 | 92.4 | 92.4 | 92.7 | 92.7 | 99.4 | 98.5 | 98.2 | Â | 98.6 | 92.1 | 94.4 | 90.7 | 90.7 | 90.7 | 90.8 | 90.6 | 92.6 | 69.1 | 68.8 | 66.1 | 65.3 |
9 | UPTC NCTC12895 | 91.8 | 91.8 | 92.1 | 92.1 | 98.8 | 97.9 | 98.2 | 98.2 | Â | 91.4 | 93.6 | 90.0 | 90.0 | 90.4 | 90.3 | 89.9 | 91.9 | 68.9 | 68.7 | 65.9 | 64.9 |
10 | UPTC NCTC12896 | 90.9 | 90.9 | 91.2 | 91.2 | 95.4 | 94.8 | 94.5 | 95.4 | 94.2 | Â | 91.9 | 98.0 | 98.0 | 98.4 | 98.3 | 98.5 | 90.1 | 68.3 | 68.2 | 66.3 | 65.0 |
11 | UPTC CF89-12 | 91.8 | 91.8 | 92.1 | 92.1 | 95.4 | 94.8 | 94.5 | 95.4 | 94.5 | 93.3 | Â | 91.3 | 91.3 | 91.2 | 91.4 | 91.2 | 91.2 | 69.2 | 69.1 | 66.3 | 65.6 |
12 | UPTC A1 | 91.2 | 91.2 | 91.5 | 91.5 | 94.5 | 94.2 | 93.9 | 94.5 | 93.3 | 97.9 | 93.6 | Â | 100.0 | 99.0 | 99.3 | 99.3 | 89.5 | 68.5 | 68.4 | 66.0 | 64.8 |
13 | UPTC A2 | 91.2 | 91.2 | 91.5 | 91.5 | 94.5 | 94.2 | 93.9 | 94.5 | 93.3 | 97.9 | 93.6 | 100.0 | Â | 99.0 | 99.3 | 99.3 | 89.5 | 68.5 | 68.4 | 65.8 | 64.8 |
14 | UPTC A3 | 91.5 | 91.5 | 91.8 | 91.8 | 94.8 | 94.5 | 94.2 | 94.8 | 93.6 | 98.8 | 93.9 | 99.1 | 99.1 | Â | 99.5 | 99.5 | 89.6 | 68.3 | 68.2 | 66.4 | 65.0 |
15 | UPTC 89049 | 91.8 | 91.8 | 92.1 | 92.1 | 95.1 | 94.8 | 94.5 | 95.1 | 93.9 | 98.5 | 94.2 | 99.4 | 99.4 | 99.7 | Â | 99.4 | 90.0 | 68.5 | 68.4 | 66.4 | 64.7 |
16 | UPTC 92251 | 91.5 | 91.5 | 91.8 | 91.8 | 94.5 | 94.2 | 93.9 | 94.5 | 93.2 | 98.5 | 93.9 | 98.8 | 98.8 | 99.7 | 99.4 | Â | 89.6 | 68.3 | 68.2 | 66.2 | 64.7 |
17 | C. lari RM2100 | 99.1 | 99.7 | 100.0 | 100.0 | 93.0 | 93.3 | 93.0 | 92.7 | 92.1 | 91.5 | 91.8 | 91.2 | 91.2 | 91.5 | 91.8 | 91.5 | Â | 68.9 | 68.7 | 65.9 | 65.6 |
18 | C. jejuni NCTC11168 | 57.0 | 57.3 | 57.6 | 57.6 | 57.6 | 57.6 | 57.3 | 57.9 | 57.3 | 56.7 | 57.7 | 57.1 | 57.1 | 56.8 | 56.8 | 56.5 | 57.1 | Â | 99.8 | 82.8 | 74.7 |
19 | C. jejuni RM1221 | 56.4 | 56.7 | 57.0 | 57.0 | 57.3 | 57.0 | 56.7 | 57.6 | 57.0 | 56.7 | 57.4 | 57.1 | 57.1 | 56.8 | 56.8 | 56.5 | 56.5 | 99.4 | Â | 82.6 | 74.5 |
20 | C. coli RM2228 | 55.5 | 55.5 | 55.8 | 55.8 | 55.2 | 55.8 | 55.5 | 55.2 | 54.9 | 55.3 | 55.3 | 55.5 | 55.5 | 55.8 | 55.8 | 55.5 | 55.3 | 81.3 | 81.0 | Â | 71.0 |
21 | C. upsaliensis RM3195 | 53.6 | 54.0 | 54.2 | 54.2 | 54.0 | 53.6 | 53.6 | 54.2 | 53.6 | 53.6 | 54.9 | 53.5 | 53.5 | 53.8 | 53.8 | 53.8 | 54.1 | 74.1 | 73.8 | 68.6 | Â |