Locus/Type | Primer | Nucleotide Sequence | Size (bp) |
---|---|---|---|
SCC mec | |||
A | CIF2 F2 | TTCGAGTTGCTGATGAAGAAGG | 495 |
 | CIF2 R2 | ATTTACCACAAGGACTACCAGC |  |
B | KDP F1 | AATCATCTGCCATTGGTGATGC | 284 |
 | KDP R1 | CGAATGAAGTGAAAGAAAGTGG |  |
C | MECI P2 | ATCAAGACTTGCATTCAGGC | 209 |
 | MECI P3 | GCGGTTTCAATTCACTTGTC |  |
D | DCS F2 | CATCCTATGATAGCTTGGTC | 342 |
 | DCS R1 | CTAAATCATAGCCATGACCG |  |
E | RIF4 F3 | GTGATTGTTCGAGATATGTGG | 243 |
 | RIF4 R9 | CGCTTTATCTGTATCTATCGC |  |
F | RIF5 F10 | TTCTTAAGTACACGCTGAATCG | 414 |
 | RIF5 R13 | GTCACAGTAATTCCATCAATGC |  |
G | IS431 P4 | CAGGTCTCTTCAGATCTACG | 381 |
 | pUB110 R1 | GAGCCATAAACACCAATAGCC |  |
H | IS431 P4 | CAGGTCTCTTCAGATCTACG | 303 |
 | pT181 R1 | GAAGAATGGGGAAAGCTTCAC |  |
mecA | MECA P4 | TCCAGATTACAACTTCACCAGG | 162 |
 | MECA P7 | CCACTTCATATCTTGTAACG |  |
SCC mec type V | |||
Type I | Type I-F | GCTTTAAAGAGTGTCGTTACAGG | 613 |
 | Type I-R | GTTCTCTCATAGTATGACGTCC |  |
Type II | Type II-F | CGTTGAAGATGATGAAGCG | 398 |
 | Type II-R | CGAAATCAATGGTTAATGGACC |  |
Type III | Type III-F | CCATATTGTGTACGATGCG | 280 |
 | Type III-R | CCTTAGTTGTCGTAACAGATCG |  |
Type IVa | Type IVa-F | GCCTTATTCGAAGAAACCG | 776 |
 | Type IVa-R | CTACTCTTCTGAAAAGCGTCG |  |
Type IVb | Type IVb-F | TCTGGAATTACTTCAGCTGC | 493 |
 | Type IVb-R | AAACAATATTGCTCTCCCTC |  |
Type IVc | Type IVc-F | ACAATATTTGTATTATCGGAGAGC | 200 |
 | Type IVc-R | TTGGTATGAGGTATTGCTGG |  |
Type IVd | Type IVd-F5 | CTCAAAATACGGACCCCAATACA | 881 |
 | Type IVd-R6 | TGCTCCAGTAATTGCTAAAG |  |
Type V | Type V-F | GAACATTGTTACTTAAATGAGCG | 325 |
 | Type V-R | TGAAAGTTGTACCCTTGACACC |  |
mecA | MecA147-F | GTG AAG ATA TACCAAGTG ATT | 147 |
 | MecA147-R | ATG CGCTATAGATTG AAAGGAT |  |
Panton-Valentine leukocidin (PVL) | |||
 | luk-PV-1 | ATCATTAGGTAAAATGTCTGGACATGATCCA | 433 |
 | luk-PV-2 | GCATCAASTGTATTGGATAGCAAAAGC |  |
Accessory gene regulator ( agr ) | |||
 | agrSa agr1-4Sa-1 | ATGCACATGG TGCACATGC |  |
 | agr-1Sa agr1Sa-2 | GTCACAAGTA CTATAAGCTG CGAT | 439 |
 | agr-2Sa agr2Sa-2 | TATTACTAAT TGAAAAGTGC CATAGC | 572 |
 | agr-3Sa agr3Sa-2 | GTAATGTAAT AGCTTGTATA ATAATACCCAG | 321 |
 | agr-4Sa agr4Sa-2 | CGATAATGCC GTAATACCCG | 657 |
Gyrase | |||
 | gyrA-F | AGTACATCGT CGTATACTAT ATGG | 280 |
 | gyrA-R | ATCACGTAAC AGTTCAAGTGTG |  |