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Table 2 Primer sequences and PCR product size used for S. Enteritidis typing

From: Multi-locus variable-number tandem repeat analysis for outbreak studies of Salmonella enterica serotype Enteritidis

Locus

Primer

Dye-Sequence

DNA sequence length in bpa (size ABI 310b)

SENTR1

SENTR1-F

HEX-GCAACAGCAGCAGCAACAG

440 (415)

 

SENTR1-R

CCGAGCTGAGATCGCCAAG

 

SENTR2

SENTR2-F

FAM-CACTGGACGATCTGGATTTCTC

519 (510)

 

SENTR2-R

GTCGCCGTTACGCATCAAC

 

SENTR3

SENTR3-F

TET-CTAAACAAGCCGCTCATCCG

494 (480)

 

SENTR3-R

ACAACCTGCTGCTGTGCTG

 

SENTR4

SENTR4-F

HEX-GACCAACACTCTATGAACCAATG

120 (120)

 

SENTR4-R

ACCAGGCAACTATTCGCTATC

 

SENTR5

SENTR5-F

FAM-CACCGCACAATCAGTGGAAC

271 (270)

 

SENTR5-R

GCGTTGAATATCGGCAGCATG

 

SENTR6

SENTR6-F

TET-ATGGACGGAGGCGATAGAC

180 (177)

 

SENTR6-R

AGCTTCACAATTTGCGTATTCG

 

SENTR7

SENTR7-F

FAM-ACGATCACCACGGTCACTTC

135 (133)

 

SENTR7-R

CGGATAACAACAGGACGCTTC

 

SE-3

SE-3F

HEX- CAACAAAACAACAGCAGCAT

308 (307)

 

SE-3R

GGGAAACGGTAATCAGAAAGT

 

SE-7

SE-7F

HEX- GATAATGCTGCCGTTGGTAA

717 (691)

 

SE-7R

ACTGCGTTTGGTTTCTTTTCT

 
  1. a based on S. Enteritidis NCTC 13349 [25].
  2. b size analysed using the capillary sequence detection system ABI 310 (Applied Biosystems)