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Table 2 Summary of new genes

From: Identification of new genes in Sinorhizobium melilotiusing the Genome Sequencer FLX system

Gene

Replicon*

Predicted start

Predicted end

Strand

Length

Co-transcribed with upstream gene

Co-transcribed with downstream gene

Target description for predicted genes

E-value

Percent similarity

VBISMa0080

A

65258

65494

-

237

SMa0121

-

-

-

-

VBISMa0492

A

410418

410660

+

243

-

-

-

-

-

VBISMa1337

A

1191271

1191525

-

255

-

-

putative dioxygenase, slightly similar to catechol 1,2-dioxygenase protein [S. meliloti 1021]

2e-4

25

VBISMb0078

B

66440

66619

+

180

-

SMb20056

hypothetical protein BMEII0534 [B. melitensis 16M]

4e-3

30

VBISMb0839

B

679069

679800

+

732

-

-

two component transcriptional regulator, LuxR family [S. medicae WSM419]

2e-68

69

VBISMc0095

C

83906

84025

+

120

tRNA-Ala

23s rRNA

-

-

-

VBISMc0802

C

662922

663287

+

366

-

-

-

-

-

VBISMc1000

C

815598

816023

+

426

-

-

hypothetical protein Smed_0338 [S. medicae WSM419]

6e-20

36

VBISMc1221

C

997383

997565

+

183

ctaE

SMc00014

hypothetical protein Smed_0524 [S. medicae WSM419]

1e-15

63

VBISMc1492

C

1208848

1209090

-

243

-

-

-

-

-

VBISMc1793

C

1444596

1444832

-

237

-

rne

-

-

-

VBISMc2171

C

1725819

1726607

-

789

-

SMc01204

hypothetical protein Smed_1270 [S. medicae WSM419]

8e-124

89

VBISMc2174

C

1728081

1728221

-

141

SMc01200

SMc01202

-

-

-

VBISMc2596

C

2060940

2061143

+

204

-

csp4

-

-

-

VBISMc2940

C

2312866

2313225

-

360

-

-

conserved hypothetical signal peptide protein [S. medicae WSM419]

2e-54

89

VBISMc2955

C

2321074

2321289

+

216

-

-

-

-

-

VBISMc3188

C

2520862

2520993

-

132

-

-

-

-

-

VBISMc3282

C

2595016

2595537

+

522

-

SMc01535

Nodulation protein nolR

9e-50

59

VBISMc4046

C

3233965

3234153

+

189

SMc03108

-

hypothetical protein pRL110117 [R. leguminosarum bv. viciae 3841]

1e-5

56

VBISMc4289

C

3417257

3419215

-

1959

-

-

hypothetical protein Cvib_0070 [P. vibrioformis DSM 265]

4e-35

47

  1. *: replicon A: pSymA; B: pSymB; C: Chromosome.
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BMC Microbiology

ISSN: 1471-2180

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