Multi locus sequence typing of Chlamydiales: clonal groupings within the obligate intracellular bacteria Chlamydia trachomatis

Table 1 Properties of gene fragments sequenced, 26 C. trachomatis strains

gene	locus tag	position in genome of Ct A/HAR-13	Length (bp)	No. of synonymous substitutions	d_S^a	No. of non-synonymous substitutions	d_N^a
gatA	CTA_0003	2759 – 3183	425	2	0.00409	0	0.00000
oppA_3	CTA_0216	224745 – 225217	473	3	0.00209	3	0.00248
hflX	CTA_0413	435569 – 435135	435	2	0.00663	1	0.00151
gidA	CTA_0546	580102 – 580575	474	1	0.00235	3	0.00205
enoA	CTA_0637	665021 – 665401	381	2	0.00562	1	0.00094
hemN	CTA_0812	871011 – 870580	432	0	0.00000	1	0.00082
fumC	CTA_0932	1007488 – 1007952	465	0	0.00000	4	0.00217
Total			3085	10	0.00294	13	0.00147

ISSN: 1471-2180