Table 3 Genes differentially expressed upon infection with PAO1 versus PA14
Cellular Biogenesis and organization | Â | Â | Â | |
|---|---|---|---|---|
Gene ID | Gene function and name | Log2 ratio: PAO1-14 | PAO1-C | PA14-C |
DDB0187116 | vps13A, vacuolar protein sorting-associated protein | 0,81 | 0,67 | -0,13 |
DDB0189855 | vps46, Vacuolar Protein Sorting | 0,83 | 0,59 | -0,24 |
Energy | Â | Â | Â | |
DDB0204335 | cxgE, "cox7E, coxVIIe", "cytochrome_c_oxidase_subunit_VII_E" | 1, 20 | 0,80 | -0,40 |
Metabolism | Â | Â | Â | |
DDB0190752 | diaminopimelate epimerase | 1,08 | 0,02 | -1,06 |
DDB0204319 | Hydroxymethyltransferase | 0,63 | 0,43 | -0,20 |
DDB0168738 | putative arginine deiminase | -0,62 | -0,78 | -0,16 |
DDB0205389 | acly, ATP citrate lyase | 0,89 | 0,75 | -0,15 |
DDB0169357 | methylenetetrahydrofolate dehydrogenase | 0,78 | 0,21 | -0,57 |
DDB0187393 | NAD-dependent epimerase/dehydratase family protein | -0,91 | -1,18 | -0,28 |
DDB0205386 | putative ATP citrate synthase | 0,96 | 0,79 | -0,17 |
DDB0205339 | rpe;"ribulose_phosphate_3-epimerase" | 0,78 | 0,43 | -0,35 |
DDB0187942 | Short-chain alcohol dehydrogenase of unknown specificit | 0,70 | 0,43 | -0,27 |
DDB0187544 | smlA | 1,43 | 1,00 | -0,43 |
DDB0217455 | zinc-containing alcohol dehydrogenase (ADH) | -1,21 | -1,16 | 0,06 |
DDB0217374 | zinc-containing alcohol dehydrogenase (ADH) | -1,02 | -1,37 | -0,35 |
DDB0190948 | acid ceramidase-like protein | -0,87 | -0,31 | 0,56 |
DDB0188248 | Acyltransferase | 0,64 | 0,16 | -0,48 |
DDB0219652 | cinB, "esterase/lipase/thioesterase_domain-containing_protein | 0,92 | 1,28 | 0,36 |
DDB0189754 | esterase/lipase/thioesterase domain-containing protein | 1,07 | 1,07 | 0,00 |
DDB0185740 | esterase/lipase/thioesterase domain-containing protein | 1,08 | 1,27 | 0,20 |
DDB0184141 | Phosphate acyltransferases | 0,55 | -0,26 | -0,82 |
DDB0167446 | pks16, putative fatty acid synthase | 1,19 | 1,81 | 0,63 |
DDB0189182 | Putative esterase/lipase/thioesterase | 0,99 | 1,43 | 0,44 |
DDB0191907 | dUTP diphosphatase | 0,61 | 0,14 | -0,47 |
DDB0217901 | purH, AICAR transformylase/IMP cyclohydrolase | 0,89 | 0,34 | -0,55 |
DDB0167009 | pyr4;"dihydroorotate_dehydrogenase, dihydroorotate_oxidase" | 0,68 | 0,18 | -0,50 |
DDB0217842 | rpiA;"ribose-5-phosphate_isomerase" | 0,63 | 0,42 | -0,21 |
DDB0189571 | Sulfite reductase, alpha subunit (flavoprotein) | -0,89 | -0,09 | 0,79 |
DDB0202318 | Cyclopropyl sterol isomerase | 0,73 | 0,31 | -0,42 |
DDB0167227 | Cytochrome b5-like Heme/Steroid binding domain | 0,86 | -0,71 | -1,57 |
DDB0168923 | dihydropteridine reductase | 0,60 | 0,14 | -0,47 |
DDB0185998 | ERG24, Ergosterol biosynthesis | 0,59 | -0,02 | -0,61 |
DDB0219255 | Fe(II) oxygenase superfamily | 1,14 | 0,91 | -0,23 |
DDB0217308 | Predicted iron-dependent peroxidase | -0,55 | -0,12 | 0,43 |
DDB0192180 | putative O-methyltransferase | 0,56 | 0,71 | 0,15 |
DDB0202301 | putative SAM dependent methyltransferase | 0,88 | 0,94 | 0,05 |
DDB0167345 | short-chain dehydrogenase/reductase (SDR) family protein | 0,73 | 0,56 | -0,17 |
Movement | Â | Â | Â | |
DDB0188280 | myoB, "DMIB, abmB", "myosin_IB" | -0,85 | -0,30 | 0,55 |
DDB0167337 | myoD, DMID, "myosin_ID_heavy_chain" | -0,81 | -0,76 | 0,05 |
Multicellular organization | Â | Â | Â | |
DDB0216906 | comC;"FIBROSURFIN_PRECURSOR" | -0,65 | -0,39 | 0,26 |
Protein destination | Â | Â | Â | |
DDB0189735 | homolog to co-chaperone p23 | 0,56 | 0,45 | -0,11 |
DDB0187409 | Acetyltransferase (GNAT) family | 0,57 | 0,33 | -0,24 |
DDB0189799 | SET domain-containing protein | 0,52 | 0,33 | -0,19 |
DDB0202482 | 26S proteasome non-ATPase regulatory subunit 9 | 0,78 | 1,25 | 0,47 |
DDB0219654 | Cysteine proteinase 1 precursor | 0,70 | 0,61 | -0,09 |
DDB0167298 | Dipeptidyl aminopeptidase | 0,51 | -0,07 | -0,59 |
DDB0190542 | Probable proteasome subunit beta type 3 | 0,57 | -0,06 | -0,63 |
DDB0216902 | prtA, M3L, "proteosomal_alpha-subunit_M3" | 0,93 | 0,94 | 0,01 |
DDB0216901 | prtB, M3R, "proteosomal_alpha-subunit_7-1" | 1,37 | 1,30 | -0,06 |
DDB0186869 | small ubiquitin-like protein | 0,61 | 0,33 | -0,28 |
DDB0217344 | ubiquitin-like domain containing CTD phosphatase | 0,52 | 0,29 | -0,23 |
Signal transduction | Â | Â | Â | |
DDB0169410 | gpaB, "Ga2, Galpha2, gpa2", "G-protein_subunit_alpha_2" | -0,82 | -0,55 | 0,27 |
DDB0190318 | rab1C;"Rab_GTPase" | 0,87 | 0,76 | -0,10 |
DDB0202066 | pakC, STE20 family protein kinase | -0,61 | -0,18 | 0,43 |
DDB0169250 | putative protein serine/threonine kinase | -0,87 | -0,58 | 0,29 |
DDB0205782 | roco6;"putative_protein_serine/threonine_kinase | -0,61 | -0,48 | 0,14 |
DDB0167076 | sepA, putative protein serine/threonine kinase | -0,57 | -0,31 | 0,26 |
DDB0217465 | fslH, G-protein-coupled receptor (GPCR) family protein | 0,71 | 0,24 | -0,46 |
DDB0205174 | grlF, GABA-B receptor-like protein | -1,41 | -1,54 | -0,12 |
DDB0168770 | grlJ, GABA-B receptor-like protein | -0,63 | -0,96 | -0,32 |
DDB0204083 | grlL, GABA-B receptor-like protein | -1,84 | -1,25 | 0,60 |
DDB0229801 | grlQ, G-protein-coupled receptor (GPCR) family protein | 0,77 | 0,98 | 0,21 |
DDB0167432 | gacFF, RacGAP | -0,57 | 0,08 | 0,66 |
DDB0167384 | putative guanine nucleotide exchange factor (GEF) | -0,70 | -0,01 | 0,70 |
DDB0167541 | dpoA;"prolyl_oligopeptidase" | -0,66 | -0,11 | 0,55 |
Stress response and cell rescue | Â | Â | Â | |
DDB0218719 | AhpC/TSA family protein | 0,82 | 0,76 | -0,05 |
DDB0205882 | AhpC/TSA family protein. Thioredoxin-like | 0,75 | 0,57 | -0,18 |
DDB0217383 | Cytochrome P450 | 1,16 | 0,42 | -0,74 |
DDB0168563 | putative glutathione S-transferase | 0,59 | -0,64 | -1,23 |
DDB0167491 | alyA;lysozyme | 0,63 | 0,73 | 0,10 |
DDB0167489 | alyB;lysozyme | 0,69 | 0,75 | 0,07 |
DDB0167490 | alyC;lysozyme | 0,71 | 0,87 | 0,16 |
Transcription | Â | Â | Â | |
DDB0206051 | member of NOD protein family | 1,05 | 0,90 | -0,15 |
DDB0202276 | srfC;"putative_MADS-box_transcription_factor" | -0,90 | -0,30 | 0,60 |
DDB0217613 | wrky1;"putative_WRKY_transcription_factor" | 1,04 | 1,11 | 0,07 |
DDB0167422 | putative histone acetyltransferase | -0,64 | -0,55 | 0,09 |
Translation | Â | Â | Â | |
DDB0201621 | mrps2, ribosomal protein S2, mitochondrial | 0,75 | 0,49 | -0,27 |
DDB0218535 | Eukaryotic elongation factor 1 (EF1) alpha subfamily | -0,83 | -0,18 | 0,65 |
DDB0167339 | tRNA-ribosyltransferase | -0,52 | -0,56 | -0,04 |
Transport facilitation | Â | Â | Â | |
DDB0187089 | abcC5;"ABC_transporter_C_family_protein" | -1,12 | -0,68 | 0,44 |
DDB0218568 | Copper-transporting P-type ATPase | -1,14 | -0,60 | 0,54 |
DDB0204460 | patA, PAT1, "Ca2+-ATPase, P-type_ATPase" | -0,93 | -0,15 | 0,78 |
DDB0205031 | potassium channel tetramerization domain-containing protein | 0,92 | 0,84 | -0,08 |
DDB0217251 | P-type cation-transporting ATPase | -2,09 | -1,46 | 0,63 |
DDB0186223 | P-type cation-transporting ATPase | -0,69 | -0,40 | 0,29 |
DDB0167361 | vatE;"vacuolar_H+-ATPase_E_subunit" | 0,54 | 0,47 | -0,08 |
DDB0217699 | phospholipid-translocating P-type ATPase family protein | -0,67 | -0,63 | 0,04 |
DDB0187945 | Sugar (and other) transporter | -0,90 | -0,78 | 0,11 |
DDB0206579 | mcfQ, mitochondrial substrate carrier family protein | 0,65 | 0,78 | 0,13 |
DDB0192172 | mcfZ, mitochondrial substrate carrier family protein | 0,73 | 0,92 | 0,18 |
DDB0183815 | Mitochondrial carrier protein | 0,55 | 0,81 | 0,26 |