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Figure 3 | BMC Microbiology

Figure 3

From: Dictyostelium transcriptional responses to Pseudomonas aeruginosa: common and specific effects from PAO1 and PA14 strains

Figure 3

Pseudomonas aeruginosa induces gene expression changes in Dictyostelium. Heat map comparing the genes significantly altered (p < 0.05) between PAO1-treated cells versus control (975) and PA14-treated cells versus control (838). Each row of the plot is a gene and was colored according to the log2ratio of expression with red meaning up-regulation in relation to the controls and blue downregulation. The histogram shows the range of changes in a log2 scale. The data presented are for the three independent experiments combined. The heatmap was generated using the heatmap.2 function of the gplots package in R [47]. The dendrogram was generated using Euclidean distance and the "complete" agglomeration method.

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