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Table 3 Significant ORFs (p value < 1 × 107) with greater than 4-fold significant changes in expression from late exponential to early stationary phase (4.6 to 5.5 h)

From: Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium

Ecs no.

Genea

Log2 change in expression

QT cluster

Ecs no.

Genea

Log2 change in expression

QT cluster

ECs0009

mogA

2.27

2

ECs0526

htpG

-2.70

1

ECs0015

dnaJ

-2.32

1

ECs0527

adk

-3.22

1

ECs0026

rpsT

-4.14

1

ECs0540

O157

3.52

2

ECs0028

ribF

-2.36

1

ECs0541

O157

4.11

2

ECs0029

ileS

-2.81

1

ECs0552

ybbK

3.00

2

ECs0030

lspA

-2.38

1

ECs0561

ybbD

2.16

2

ECs0032

lytB

-2.20

1

ECs0615

ybdG

-2.36

1

ECs0036

carB

-3.28

1

ECs0619

ybdK

2.98

2

ECs0052

ccdA

2.41

2

ECs0645

ahpF

-2.11

1

ECs0078

leuA

2.55

un

ECs0646

ybdQ

3.35

3

ECs0108

guaC

-2.45

1

ECs0656

citD

2.79

2

ECs0118

aceE

-3.27

1

ECs0864

ybhL

2.61

2

ECs0119

aceF

-2.55

1

ECs0866

ybhN

2.27

2

ECs0123

yacL

3.17

2

ECs0881

ybiI

3.35

2

ECs0128

gcd

2.69

2

ECs0896

ybiS

-2.07

1

ECs0168

dapD

-3.16

1

ECs0915

yliG

-2.77

1

ECs0172

tsf

-4.58

1

ECs0919

dacC

2.40

2

ECs0173

pyrH

-3.15

1

ECs0934

potF

2.12

2

ECs0182

fabZ

-2.20

1

ECs0944

artM

-2.40

1

ECs0199

yaeC

-3.14

1

ECs0963

ybjX

-2.08

1

ECs0200

yaeE

-2.63

1

ECs0974

lrp

-3.19

1

ECs0201

abc

-3.32

1

ECs0979

dmsA

-3.37

4

ECs0216

O157

2.02

2

ECs0989

ycaP

2.56

2

ECs0248

fadE

4.57

2

ECs0990

serC

-3.29

1

ECs0253

dinJ

2.46

2

ECs0991

aroA

-4.24

1

ECs0269

proB

-2.11

1

ECs1007

mukB

-2.12

1

ECs0383

yahO

4.53

2

ECs1013

asnS

-2.74

1

ECs0384

prpR

3.63

2

ECs1014

pncB

-2.37

1

ECs0390

codA

-2.78

1

ECs1022

ycbR

-3.16

1

ECs0415

afuA

5.21

2

ECs1048

-

2.44

2

ECs0434

psiF

3.83

2

ECs1050

yccV

3.88

2

ECs0458

yajC

-2.33

1

ECs1158

agp

3.47

2

ECs0459

secD

-2.40

1

ECs1159

yccJ

2.12

2

ECs0490

tig

-2.96

1

ECs1211

O157

-3.29

1

ECs0497

ybaW

2.93

2

ECs1266

phoH

7.69

2

ECs0502

mdlA

-3.80

1

ECs1351

terZ

-2.58

1

ECs0503

mdlB

2.30

2

ECs1355

terD

-2.53

1

ECs0504

glnK

-3.73

1

ECs1356

terE

-2.90

1

ECs0507

ybaY

3.19

2

ECs1423

-

2.34

2

ECs0509

ybaA

2.56

2

ECs1438

yceP

4.78

2

ECs0518

aefA

2.12

2

ECs1466

yceD

-2.86

1

ECs1467

rpmF

-2.36

1

ECs2307

ydgG

-2.69

1

ECs1500

potC

-2.14

1

ECs2308

pntB

-2.80

1

ECs1603

purB

-3.58

1

ECs2314

rstA

-2.63

1

ECs1605

ycfB

-2.43

1

ECs2319

manA

-2.47

1

ECs1663

ompT

-2.72

1

ECs2346

tyrS

-2.97

1

ECs1683

ycgB

5.36

2

ECs2385

ynhG

3.80

2

ECs1692

ymgE

2.35

2

ECs2387

sufS

2.88

2

ECs1705

-

2.55

2

ECs2389

sufC

3.58

2

ECs1722

chaB

2.85

2

ECs2390

sufB

2.93

2

ECs1729

narG

-2.70

4

ECs2391

sufA

3.68

2

ECs1743

oppA

-2.75

1

ECs2397

-

2.44

2

ECs1747

oppF

-2.11

1

ECs2423

rplT

-3.11

1

ECs1831

yciG

2.91

2

ECs2430

ydiZ

2.09

2

ECs1848

-

2.73

2

ECs2450

ydjS

3.94

2

ECs1849

acnA

4.07

2

ECs2451

astB

4.11

2

ECs1858

yciR

3.14

2

ECs2452

astD

5.88

2

ECs1874

ycjK

4.73

2

ECs2453

astA

4.62

2

ECs1875

ycjL

5.14

2

ECs2454

astC

6.97

2

ECs1914

ydaA

2.88

2

ECs2460

-

-2.03

1

ECs1997

ynaF

3.42

2

ECs2463

ynjE

-4.04

1

ECs2028

ydcJ

3.64

2

ECs2467

gdhA

-5.15

1

ECs2036

ydcL

3.78

2

ECs2491

yeaF

-2.61

1

ECs2044

ydcS

5.22

2

ECs2492

yeaG

4.08

2

ECs2045

ydcT

5.23

2

ECs2511

yeaW

2.43

2

ECs2054

ydcU

2.59

2

ECs2514

fadD

2.50

2

ECs2082

adhP

3.62

2

ECs2519

yoaC

2.05

2

ECs2084

rpsV

2.45

2

ECs2527

manX

-2.95

1

ECs2086

osmC

2.01

2

ECs2528

manY

-3.21

1

ECs2091

-

3.38

2

ECs2546

ydjX

4.09

2

ECs2092

-

3.70

2

ECs2560

eda

-2.65

1

ECs2113

O157

-3.24

1

ECs2574

yebC

-2.87

1

ECs2118

ydeV

3.60

2

ECs2575

ntpA

-2.15

1

ECs2119

ydeW

2.54

2

ECs2586

argS

-2.77

1

ECs2120

-

4.17

2

ECs2609

araF

3.61

2

ECs2126

tam

2.83

2

ECs2613

ftn

-3.88

1

ECs2145

ydeI

3.74

2

ECs2614

yecH

-2.94

6

ECs2146

ydeJ

2.05

2

ECs2668

yedE

-2.15

1

ECs2150

ydfZ

-5.10

4

ECs2669

yedF

-2.78

1

ECs2281

O157

2.30

2

ECs2670

yedK

2.55

2

ECs2292

-

3.22

2

ECs2693

-

2.62

2

ECs2295

ynfG

-2.81

6

ECs2785

erfK

2.37

2

ECs2820

hisG

-2.80

1

ECs3458

yfiO

-2.61

1

ECs2821

hisD

-2.57

1

ECs3465

yfiL

3.81

2

ECs2822

hisC

-2.52

1

ECs3469

rplS

-4.28

1

ECs2824

hisH

-2.22

1

ECs3470

trmD

-5.46

1

ECs2837

wbdQ

-2.35

1

ECs3472

rpsP

-5.57

1

ECs2888

yegP

4.47

2

ECs3520

ygaT

4.88

2

ECs2892

yegS

3.38

2

ECs3522

gabD

2.53

2

ECs2900

fbaB

2.45

2

ECs3523

gabT

3.14

2

ECs2920

metG

-2.59

1

ECs3533

ygaM

3.32

2

ECs3022

yohC

6.12

2

ECs3554

alaS

-2.20

1

ECs3029

O157

4.04

2

ECs3605

cysN

-3.19

1

ECs3030

O157

3.38

2

ECs3617

cysH

-2.76

1

ECs3053

yeiJ

-2.67

1

ECs3619

cysJ

-4.11

1

ECs3055

yeiL

2.38

2

ECs3655

ygdH

2.14

2

ECs3073

yejG

2.91

2

ECs3669

-

2.28

2

ECs3077

rplY

-3.64

1

ECs3742

ygeV

3.64

2

ECs3078

yejK

-2.55

1

ECs3750

ygfJ

4.14

2

ECs3102

ada

2.24

2

ECs3761

-

2.76

2

ECs3114

gyrA

-3.38

1

ECs3762

lysS

-2.92

1

ECs3181

pta

-3.50

1

ECs3771

-

3.52

2

ECs3224

fadJ

4.26

2

ECs3772

yqfB

-2.02

1

ECs3225

fadI

4.50

2

ECs3784

serA

-3.66

1

ECs3227

fadL

5.39

2

ECs3810

tktA

-4.16

1

ECs3230

yfdC

2.55

2

ECs3815

yqgB

-2.40

1

ECs3259

yfdZ

3.57

2

ECs3833

ansB

-2.31

4

ECs3271

-

3.06

2

ECs3896

yqhE

2.86

2

ECs3272

nupC

-2.08

1

ECs3904

ygiS

-2.33

1

ECs3278

gltX

-2.47

1

ECs3948

rpsU

-3.14

1

ECs3286

cysK

-3.68

1

ECs3955

ygjG

5.55

2

ECs3293

cysA

-2.71

1

ECs3963

ygjL

4.06

2

ECs3302

yfeX

-2.24

1

ECs3979

yqjC

2.12

2

ECs3322

-

2.10

2

ECs3980

yqjD

2.28

2

ECs3323

-

2.15

2

ECs4033

yraR

2.71

2

ECs3338

purC

-5.04

1

ECs4034

yhbO

3.67

2

ECs3339

nlpB

-2.13

1

ECs4040

yhbV

-3.40

1

ECs3369

guaA

-2.99

1

ECs4064

rpmA

-3.29

1

ECs3397

-

2.55

2

ECs4068

murA

-3.01

1

ECs3401

csiE

3.77

2

ECs4069

yrbA

-2.73

1

ECs3409

yphA

3.07

2

ECs4091

gltB

-3.19

1

ECs3434

lepB

-2.08

1

ECs4092

gltD

-3.80

1

ECs3445

yfiD

-6.36

6

ECs4104

rplM

-4.05

1

ECs4112

yhcO

3.56

2

ECs4404

yhjG

2.50

2

ECs4127

accB

-2.57

1

ECs4427

O157

2.20

2

ECs4128

accC

-3.51

1

ECs4433

yhjY

3.88

2

ECs4133

fis

-3.76

1

ECs4438

yiaE

-2.49

1

ECs4159

rplQ

-3.99

1

ECs4440

yiaG

2.73

2

ECs4160

rpoA

-4.11

1

ECs4449

xylF

2.34

2

ECs4163

rpsM

-3.05

1

ECs4463

yiaW

2.75

2

ECs4166

rplO

-3.63

1

ECs4464

aldB

3.02

2

ECs4167

rpmD

-3.70

1

ECs4473

yibH

3.78

2

ECs4168

rpsE

-3.75

1

ECs4475

mtlA

2.84

2

ECs4169

rplR

-3.75

1

ECs4511

rpmG

-3.21

1

ECs4170

rplF

-3.62

1

ECs4514

dfp

-2.28

1

ECs4171

rpsH

-4.00

1

ECs4554

espB

-2.41

1

ECs4172

rpsN

-3.13

1

ECs4555

espD

-2.60

1

ECs4173

rplE

-4.26

1

ECs4611

ilvN

4.84

2

ECs4174

rplX

-4.14

1

ECs4612

ilvB

4.41

2

ECs4175

rplN

-4.46

1

ECs4633

yidB

3.85

2

ECs4176

rpsQ

-4.30

1

ECs4672

glmU

-2.20

1

ECs4177

rpmC

-4.12

1

ECs4674

atpD

-2.97

1

ECs4178

rplP

-3.60

1

ECs4675

atpG

-3.77

1

ECs4179

rpsC

-5.07

1

ECs4676

atpA

-4.02

1

ECs4180

rplV

-4.74

1

ECs4677

atpH

-4.50

1

ECs4181

rpsS

-4.14

1

ECs4678

atpF

-4.08

1

ECs4182

rplB

-4.83

1

ECs4680

atpB

-3.27

1

ECs4183

rplW

-5.75

1

ECs4684

mioC

-2.10

1

ECs4184

rplD

-6.50

1

ECs4686

asnA

-3.68

1

ECs4185

rplC

-4.69

1

ECs4708

ilvC

-3.31

1

ECs4186

rpsJ

-5.93

1

ECs4757

yigM

-2.00

1

ECs4189

-

3.24

2

ECs4758

metR

-3.26

1

ECs4191

fusA

-3.27

1

ECs4760

-

3.29

3

ECs4210

argD

-2.36

1

ECs4774

fadB

6.58

2

ECs4212

fic

4.44

2

ECs4783

dsbA

-2.15

1

ECs4213

yhfG

4.13

2

ECs4785

yihG

2.17

2

ECs4232

aroK

-3.21

1

ECs4792

glnA

-5.34

1

ECs4244

yhgE

-3.33

1

ECs4793

yihK

-2.43

1

ECs4278

asd

-2.55

1

ECs4847

yiiS

2.66

2

ECs4299

ugpB

6.46

2

ECs4869

metL

-2.30

1

ECs4348

yhhG

-2.67

1

ECs4884

yijP

-3.62

1

ECs4398

yhjA

-2.20

6

ECs4889

argH

-4.04

1

ECs4399

treF

3.03

2

ECs4898

murI

-2.51

1

ECs4402

yhjD

2.51

2

ECs4906

rplK

-4.80

1

ECs4910

rpoB

-2.90

1

ECs5123

groES

-3.66

1

ECs4911

rpoC

-2.86

1

ECs5130

blc

3.64

2

ECs4914

thiG

-2.22

1

ECs5176

rpsF

-4.84

1

ECs4915

thiF

-2.80

1

ECs5177

priB

-5.00

1

ECs4916

thiE

-2.34

1

ECs5178

rpsR

-4.46

1

ECs4917

thiC

-2.35

1

ECs5179

rplI

-3.90

1

ECs4928

purD

-4.58

1

ECs5185

fklB

-2.32

1

ECs4933

aceA

4.98

2

ECs5194

ytfJ

4.59

2

ECs4934

aceK

2.90

2

ECs5205

ytfQ

6.29

2

ECs4990

O157

2.13

2

ECs5206

-

2.57

3

ECs4991

O157

2.12

2

ECs5207

ytfT

3.32

2

ECs5007

lysC

-3.43

1

ECs5208

yjfF

2.59

2

ECs5038

pfkA

2.14

2

ECs5211

yjgA

2.20

2

ECs5039

yjbR

2.21

2

ECs5213

cybC

2.20

2

ECs5049

actP

4.17

2

ECs5222

pyrB

-2.95

1

ECs5050

yjcH

3.78

2

ECs5253

O157

2.70

2

ECs5089

phnB

4.22

2

ECs5332

yjjG

3.09

2

ECs5109

yjdJ

3.07

2

    
  1. aGenes with "O157" indicate that these are O157-specific ORFs.