Table 1 Spoligopatterns and family assignment
Spoligotype | Shared type | SpolDB4 ID | SpotClust ID | SpotClust probability | No. of isolates with identical pattern |
|---|---|---|---|---|---|
| 1 | Beijing | 1 | 7 | |
| 4 | LAM3/S | 1 | 1 | |
| 1468 | LAM11-ZWE | 0,99 | 1 | |
| NEW | LAM8 | 0,99 | 1 | |
| 964 | LAM9 | 0,97 | 1 | |
| NEW | LAM9 | 0,99 | 1 | |
| NEW | LAM9 | 0,99 | 1 | |
| NEW | LAM3 | 0,99 | 1 | |
| NEW | LAM8 | 0,99 | 1 | |
| NEW | LAM10 | 0,99 | 1 | |
| NEW | LAM8 | 0,99 | 1 | |
| NEW | LAM8 | 0,99 | 2 | |
| 150 | LAM9 | 0,99 | 1 | |
| 811 | LAM4 | 0,99 | 2 | |
| 59 | LAM11-ZWE | 0,99 | 8 | |
| NEW | LAM9 | 0,99 | 1 | |
| 1530 | LAM9 | 0,99 | 1 | |
| 42 | LAM9 | 0,99 | 5 | |
| 61 | LAM10-CAM | 0,99 | 3 | |
| 288 | CAS2 | 1 | 1 | |
| NEW | CAS | 0,99 | 1 | |
| NEW | CAS | 1 | 1 | |
| 1675 | CAS1-kili | 1 | 6 | |
| NEW | CAS | 1 | 1 | |
| 21 | CAS1-kili | 1 | 27 | |
| NEW | CAS | 1 | 1 | |
| 22 | CAS | 1 | 3 | |
| 486 | CAS | 1 | 1 | |
| NEW | CAS | 1 | 1 | |
| NEW | CAS1-DAR | 1 | 2 | |
| NEW | CAS1-DAR | 1 | 2 | |
| NEW | CAS1-DAR | 1 | 3 | |
| NEW | CAS1-DAR | 1 | 1 | |
| NEW | CAS1-DAR | 1 | 1 | |
| NEW | EAI4 | 0,96 | 1 | |
| NEW | EAI5 | 0,99 | 1 | |
| 733 | EAI5 | 0,99 | 1 | |
| EAI5 | 1 | 1 | ||
| NEW | EAI5 | 0,99 | 1 | |
| NEW | EAI2 | 0,99 | 1 | |
| NEW | EAI1 | 0,99 | 1 | |
| 1864 | EAI5 | 1 | 1 | |
| NEW | EAI5 | 1 | 2 | |
| NEW | EAI5 | 1 | 2 | |
| NEW | EAI5 | 1 | 1 | |
| 8 | EAI5/EAI3 | 1 | 6 | |
| NEW | EAI2 | 0,99 | 1 | |
| NEW | EAI3 | 0,99 | 1 | |
| NEW | EAI5 | 0,99 | 1 | |
| NEW | EAI5 | 0,99 | 1 | |
| NEW | EAI4 | 0,99 | 1 | |
| 129 | EAI5 | 0,99 | 1 | |
| 53 | T1 | 0,99 | 3 | |
| NEW | T1 | 0,99 | 1 | |
| NEW | T1 | 0,99 | 1 | |
| 420 | T2 | 0,91 | 1 | |
| NEW | T1 | 0,99 | 1 | |
| 205 | T1 | 0,99 | 1 | |
| NEW | T1 | 0,99 | 1 | |
| NEW | T1 | 0,99 | 1 | |
| 1166 | T1 | 0,99 | 1 | |
| NEW | T1 | 0,99 | 1 | |
| NEW | Family36 | 1 | 1 | |
| NEW | Family33 | 1 | 1 | |
| NEW | Family33 | 0,99 | 1 | |
| NEW | Family33 | 1 | 1 | |
| NEW | Family33 | 0,99 | 2 | |
| NEW | H37Rv | 0,98 | 1 | |
| NEW | H37Rv | 0,99 | 1 | |
| NEW | S | 0,98 | 2 | |
| NEW | S | 0,98 | 1 | |
| NEW | X1 | 0,91 | 1 | |
| 402 | U | 0,85 | 1 | |
| 354 | U | 0,99 | 3 | |
| 1196 | U | 0,99 | 1 |
