Table 4 General PCR and sequencing primers used for amplification of 16S rDNA

RIT593 (F)

11–35 (U1)

GTT TGA TCC TGG CTC AGG AYD AAC G

PCR

Johansson et al. [36]

kag-001 (R)

1482–1507 (U8)

TAC CTT GTT ACG ACT TMA CCC CAA TC

PCR

This study

RIT583 (F)

13–28 (U1)

TTG ATC CTG GCT CAG G

Seq.

Johansson et al. [36]

RIT584 (F)

334–352 (U2)

CCA RAC TCC TAC GGR AGG C

Seq.

Johansson et al. [36]

RIT631 (R)

519–534 (U3)

ATT ACC GCG GCK GCT G

Seq.

Johansson et al. [36]

RIT538 (F)

800–818 (U4)

GTA GTC CAC GCC GTA AAC G

Seq.

Johansson et al. [36]

kag-011 (R)

922–939 (U5)

CTT GTG CGG GYY CCC GTC

Seq.

This study

kag-006 (F)

1174–1192 (U6)

GGA GGA AGG TRG GRA TGA C

Seq.

This study

kag-002 (R)

1488–1506 (U8)

ACC TTG TTA CGA CTT MAC C

Seq.

This study