- Research article
- Open Access
Hydrogen peroxide scavenging is not a virulence determinant in the pathogenesis of Haemophilus influenzae type b strain Eagan
© Vergauwen et al; licensee BioMed Central Ltd. 2006
- Received: 30 August 2005
- Accepted: 23 January 2006
- Published: 23 January 2006
A potentially lethal flux of hydrogen peroxide (H2O2) is continuously generated during aerobic metabolism. It follows that aerobic organisms have equipped themselves with specific H2O2 dismutases and H2O2 reductases, of which catalase and the alkyl hydroperoxide reductase (AhpR) are the best-studied prokaryotic members. The sequenced Haemophilus influenzae Rd genome reveals one catalase, designated HktE, and no AhpR. However, Haemophilus influenzae type b strain Eagan (Hib), a causative agent of bacterial sepsis and meningitis in young children, disrupted in its hktE gene is not attenuated in virulence, and retains the ability to rapidly scavenge H2O2. This redundancy in H2O2-scavenging is accounted for by peroxidatic activity which specifically uses glutathione as the reducing substrate.
We show here that inside acatalasaemic H. influenzae all of the residual peroxidatic activity is catalyzed by PGdx, a hybrid peroxiredoxin-glutaredoxin glutathione-dependent peroxidase. In vitro kinetic assays on crude hktE- pgdx- H. influenzae Rd extracts revealed the presence of NAD(P)H:peroxide oxidoreductase activity, which, however, appears to be physiologically insignificant because of its low affinity for H2O2 (Km = 1.1 mM). Hydroperoxidase-deficient hktE- pgdx- H. influenzae Rd showed a slightly affected aerobic growth phenotype in rich broth, while, in chemically defined medium, growth was completely inhibited by aerobic conditions, unless the medium contained an amino acid/vitamin supplement. To study the role of PGdx in virulence and to assess the requirement of H2O2-scavenging during the course of infection, both a pgdx single mutant and a pgdx/hktE double mutant of Hib were assayed for virulence in an infant rat model. The ability of both mutant strains to cause bacteremia was unaffected.
Catalase (HktE) and a sole peroxidase (PGdx) account for the majority of scavenging of metabolically generated H2O2 in the H. influenzae cytoplasm. Growth experiments with hydroperoxidase-deficient hktE- pgdx- H. influenzae Rd suggest that the cytotoxicity inflicted by the continuous accumulation of H2O2 during aerobic growth brings about bacteriostasis rather than bacterial killing. Finally, H2O2-scavenging is not a determinant of Hib virulence in the infant rat model of infection.
- Aerobic Growth
- Peroxidatic Activity
- Alkyl Hydroperoxide Reductase
- Ferrous Sulfate Heptahydrate
- Integrative Disruption
Haemophilus influenzae is a common pathogen among children and immuno-comprised adults with clinical manifestations that are largely type specific. The encapsulated H. influenzae serotype b (Hib) usually causes invasive infections, such as meningitis and septicemia , whereas the much more common nonencapsulated, or nontypeable, H. influenzae is a major cause of otitis media, sinusitis, and pneumonia . H. influenzae colonizes the nasopharynx of up to 75% of the population, from where the Hib strains in particular can invade the bloodstream and subsequently pass to the central nervous system. In the course of this pathogenic sequence, the organism moves from sites with high partial oxygen pressure (the nasopharyngeal mucosa; pO2 = 100 to 160 mm Hg ) to lower oxygenated body compartments (arterial and venous blood and cerebrospinal fluid; pO2 = 3 to 100 mm Hg ). These latter levels of oxygen, however, are generally sufficient to inflict injury on colonizing bacteria that are strictly anaerobic in nature or that have been deprived of defences against oxygen toxicity [4–7].
Molecular oxygen chemically oxidizes redox centers in all aerobic organisms, generating a flux of hydrogen peroxide (H2O2) and superoxide radicals (O2•-) that can potentially damage the cell through chemical modification of cellular building blocks, in the case of DNA leading to an increased and lethal mutation rate . The array of protective measures oxygen-respiring aerobes developed to deal with H2O2/O2•- emphasises the burden that oxidative stress clearly puts on aerobic life. Aerobic organisms generate – or garner from their surroundings – a variety of water- and lipid soluble anti-oxidant compounds. Additionally, virtually all oxygen-respiring organisms contain enzymes that convert O2•- and H2O2 to innocuous products. Moreover, several damage removal/repair enzymes are constitutively synthesized to deal with chemically modified proteins, lipids and DNA. Finally, since O2•-/H2O2-levels may vary from time to time – because these levels are the result of a first order chemical reaction with respect to oxygen tension , and because such stress can also result from an exogenous source (e.g. bacterial competitors  or host inflammatory cells) – organisms are able to adapt to such fluctuating oxidative stresses by inducing the synthesis of antioxidant and damage/repair enzymes. Because of the ubiquity of O2•-/H2O2-scavenging enzymes among oxygen-respiring organisms, it follows that scavenging should hold a prominent place among the protective measures against oxygen toxicity.
This prediction was affirmed by studies of superoxide dismutase (SOD)-deficient and hydroperoxidase-deficient mutants of Escherichia coli. sodA- sodB-  and katG- katE- ahpR- E. coli both suffer elevated rates of oxygen-mediated DNA damage when grown aerobically in rich broth. By characterizing and comparing the H2O2-sensitivities of acatalasaemic (katG- katE-) E. coli and E. coli defective in alkyl hydroperoxide reductase (AhpR), Seaver and Imlay  found that the H2O2 dismutase activity of catalase and the H2O2 peroxidatic activity of AhpR serve redundant, but distinct roles inside the E. coli cell. The bipartite alkyl hydroperoxidase system AhpR, composed of a typical 2-cys peroxiredoxin AhpC (the actual peroxidase) and the flavoprotein reductant AhpF , are the primary scavengers of endogenous low level H2O2, while catalase is the more effective scavenger when H2O2-levels are high and, presumably, when the absence of a carbon source depletes the cell of NAD(P)H necessary for AhpR activity.
Compared to competing bacteria in the upper respiratory tract of humans, H. influenzae is generally more sensitive to either oxygen- and H2O2-mediated cytotoxicity [4, 9], which may corroborate with the predicted absence of an AhpR homologue in the sequenced H. influenzae Rd genome . Nonetheless, mutating the sole structural gene for catalase, designated hktE, does not cause H. influenzae type b strain Eagan to grow poorly under aerobic conditions, nor to be reduced in virulence . In fact, acatalasaemic H. influenzae Rd compared to its parental strain is not significantly more sensitive to the antimicrobial H2O2-production of Streptococcus pneumoniae , implying that catalase does little to protect H. influenzae under these conditions.
Additional and efficient hydroperoxidase activity was thus envisioned to be expressed by H. influenzae, and recently a candidate structural gene, termed pgdx, was cloned and characterized . pgdx encodes for the atypical 2-cys peroxiredoxin PGdx, which catalyzes the reduction of both H2O2 and organic hydroperoxides, specifically by using glutathione – which H. influenzae has to garner from its surroundings  – as the reducing substrate. Besides its probable role as central H2O2-scavenger, Murphy et al.  proposed a function for PGdx in the process of biofilm formation of non-typeable H. influenzae during respiratory tract infections, and showed that chronic obstructive pulmonary disease patients persistently colonized with H. influenzae can develop antibodies against PGdx.
In this study, a hktE/pgdx H. influenzae Rd mutant unable to produce either catalase or PGdx was constructed and evaluated with respect to its sensitivity towards endogenously generated and exogenously supplied H2O2. These mutations were moved to Hib strain Eagan, the prototypic virulent strain used to assess virulence utilizing the infant rat model, to explore the impact of increased H2O2-stress on the ability of H. influenzae to cause invasive disease. Virulence of the hktE/pgdx double mutant was compared with that of the isogenic pgdx single mutant strain, and with wild-type virulence established for the Hib strain Eagan parent.
Construction of a hydroperoxidase-deficient H. influenzae Rd mutant
Because of the probable H2O2-stress provoked by the disruption of both the hktE and pgdx genes, pgdx disruptants of AB2593 were selected under anaerobic conditions. Unexpectedly, however, hktE- pgdx- H. influenzae Rd colonies were indistinguishable from wild-type colonies when grown aerobically on sBHI plates. On MIc plates, aerobically grown hktE- pgdx- H. influenzae Rd colonies were on the contrary roughly edged and much smaller than their wild-type counterparts (data not shown).
Low micromolar H2O2-toxicity is bacteriostatic rather than bacteriocidal to hktE- pgdx- H. influenzae Rd
In a previous report, we showed that, because catalase is less efficient in scavenging metabolically-generated H2O2 than is PGdx, catalase of H. influenzae Rd cells that lack functional PGdx (because of the absence of its reductant, i.e. glutathione) is induced about two-fold during routine aerobic growth compared to catalase activity of totally hydroperoxidase-proficient cells , while a transient induction of about seven-fold is noticeable after an anaerobic culture was shifted to air . This observation favours the general view that the oxidative stress encountered by microorganisms during an aerobic shift is substantially higher than during routine aerobic growth. So, wild-type and hktE- pgdx- H. influenzae Rd cells were grown anaerobically in sBHI broth to early exponential phase, after which the cultures were shifted to air (Fig. 3B). Hydroperoxidase-deficiency once more did not bring about a fundamental reduction in growth rate in response to the applied oxidative stress, while again lowered the final culture density compared to the isogenic parent. From these anaerobic-to-aerobic shifted cultures, dilutions were prepared at the early stationary phase, and aerobic growth was monitored (Fig. 3B). The resulting growth curves are similar to those obtained from anaerobically pregrown cultures, indicating that the higher level of oxidative stress encountered during the shift to aerobiosis does not cause significant DNA damage to hydroperoxidase-deficient H. influenzae Rd grown in rich medium.
In 1976, Boehme and coworkers  reported that certain amino acid biosynthesis pathways of E. coli are extremely vulnerable to oxidative inactivation. To test the hypothesis that aerobically grown hktE- pgdx- H. influenzae Rd cells in MIc medium are not viable because of the inability to synthesize certain amino acids or vitamins, the growth experiments were repeated in MIc medium that was supplemented with all 20 essential amino acids (final concentration of 40 μg/ml), together with the vitamins riboflavin, niacinamide, pyridoxine and thiamine (final concentration of 1 μg/ml) (Fig. 4A). The aerobic growth defect of the hktE- pgdx- H. influenzae Rd strain was largely alleviated by the amino acid/vitamin enrichment of the minimal medium, as inferred from the slightly lower doubling time compared to growth in rich sBHI broth.
In summary, respiratory-generated H2O2 seems to affect growth of hydroperoxidase-deficient H. influenzae Rd by blocking the supply of cellular building blocks, resulting in bacteriostasis. It thus appears that hktE- pgdx- H. influenzae Rd prevents the continuously generated stream of H2O2 being bacteriocidal, either by limiting the ferrous iron-mediated chemical reduction to the extremely harmful hydroxyl radicals (Fenton chemistry [22, 23]) or perhaps by having particularly efficient DNA damage repair mechanisms.
Crude hktE- pgdx- H. influenzae Rd cell extracts contain low-specific NAD(P)H peroxidase activity
For the NADPH:peroxide oxidoreductase activity to be a determinant factor for the hktE- pgdx- H. influenzae Rd cells remaining as fit under aerobic conditions in rich medium as their isogenic parent, one would expect this peroxidatic activity to be regulated in response to oxidative stress. So, NADPH peroxidatic activity was measured in crude extracts derived from wild-type and hktE- pgdx- H. influenzae Rd cultures using t-BOOH as the oxidizing substrate. For the purpose of the present study, monitoring the NADPH-dependent turnover of H2O2 would be more appropriate, however, the endogenous catalase activity of wild-type cells conflicts with this approach. No induction of NADPH-dependent t-BOOH peroxidase activity was apparent. In fact, from the recorded specific activities of 11.8 ± 1.3 nmol/min mg protein and 8.2 ± 2.1 nmol/min mg protein for wild-type and hktE- pgdx- H. influenzae Rd cell extracts respectively, it seems that NADPH:t-BOOH oxidoreductase activity is slightly repressed as the result of H2O2-stress.
Hydroperoxidase-deficient H. influenzae strain Eagan is not attenuated in virulence
To determine the involvement of PGdx in the pathogenic sequence leading to bacteremia and to assess the influence of increased H2O2-stress on Hib virulence, both a single Hib Eagan mutant disrupted in its pgdx gene, and a Hib Eagan hktE pgdx double mutant were created by moving these mutations from the genetically modified Rd strains to competence-induced Hib Eagan cells (Fig. 1). Growth of wild-type and hktE- pgdx- Hib Eagan strains in rich sBHI and chemically defined MIc liquid medium showed similar trends as described for their Rd counterparts (data not shown). Moreover, Fig. 2 shows that the hktE- pgdx- Hib Eagan double mutant is completely unable to metabolise low μM concentrations of H2O2, while Fig. 5 shows that the double mutant cells are sensitised to H2O2-stress due to low-complex nutrient availability. These two phenotypes match those observed for the Rd counterparts and conclusions are to be drawn accordingly. To assess virulence, wild-type Hib Eagan and mutant strains were cultured anaerobically to mid-exponential phase, diluted to ~200 CFU/100 μl, and intraperitoneally inoculated into 5-day-old infant rats. Bacteremia was assessed at 48 hours by culturing a tail vein blood sample anaerobically on sBHI plates containing the appropriate antibiotics. Compared to wild-type Hib Eagan (814 ± 380 CFU/5 μl blood; n = 6), both pgdx- (899 ± 248 CFU/5 μl blood; n = 5) and hktE- pgdx- Hib Eagan (782 ± 433 CFU/5 μl blood; n = 4) were not attenuated in virulence.
A Hib mutant defective in lipoamide dehydrogenase is indistinguishable under anaerobic conditions from its isogenic parent, while showing no growth at all in the presence of air . Because this strain is severely reduced in virulence, it was concluded that Hib requires the ability for aerobic respiration in order to complete its pathogenic sequence leading to invasive disease. It thus follows that Hib strains are subjected to O2•-/H2O2-toxicity in the course of bacteremia. Nonetheless, the fitness of our hydroperoxidase-deficient H. influenzae Rd mutant is only marginally affected by aerobic conditions in rich sBHI broth, and hktE- pgdx- Hib Eagan displays a normal ability to produce persistent bacteremia in infant rats. Similar observations are reported for SOD-deficient Hib , suggesting that in the infant rat model of infection, neither phagocytic cells and their respiratory bursts, nor the potentially toxic O2-levels in the blood, play a major role in limiting Hib virulence. The pathogenic sequence of Salmonella typhimurium – another causative agent of bacteremia in humans – to cause infection when injected into mice by the intraperitoneal route, is also indifferent to the presence of either catalase , AhpC or OxyR  (which regulates transcription of about 30 proteins in response to fluctuating H2O2-levels ), while a severe attenuation in virulence is noticeable for a Salmonella typhimurium recA mutant defective in DNA repair . Thus, the ability to repair damaged DNA appears to be more important than the ability to directly inactivate the mediators of oxygen toxicity, O2•- and H2O2, during the course of invasive infection of pathogenic agents that are able to deceive the host inflammatory system.
Acatalasaemic H. influenzae Rd does not grow in chemically defined MIc medium, because of an abrogated ability to remove H2O2 . Because wild-type growth as well as wild-type H2O2-scavenging activity (of low micromolar levels of H2O2) is regained simply by adding glutathione to the minimal medium, we envisioned that the remainder of hydroperoxidase activity inside acatalasaemic H. influenzae Rd is catalyzed in a glutathione-dependent manner . We hypothesized PGdx to be the most likely candidate to catalyze this activity because of its high specificity for H2O2-reduction (kcat/Km = 5.01 × 106 s-1 M-1) and because completion of its peroxidatic cycle exclusively depends on the presence of glutathione (e.g. thioredoxin can not act as a PGdx reductant) . This hypothesis is confirmed here given that either a H. influenzae Rd or a Hib Eagan double mutant that lacks both catalase and PGdx can not catalyze turnover of micromolar amounts of H2O2 (Fig. 2). Thus, catalase (HktE) and a sole peroxidase (PGdx) account for the majority of H2O2-scavenging in the H. influenzae cytoplasm. The H2O2-scavenging machinery of E. coli also is embodied by catalase (KatG) and a sole peroxidase, in this case AhpC instead of PGdx . Although being clearly dissimilar with regard to the reductive branch of their peroxidatic cycles, the peroxiredoxins AhpC and PGdx can be regarded as being functionally analogous, since i) their kinetic parameters for either the reduction of H2O2 or t-BOOH are very similar [15, 28]; ii) they both appear to be of most importance during routine exponential growth (when the H2O2-concentrations are low and the supply of reductant is high) [11, 19]; iii) they both are among the most abundantly expressed proteins ; iv) neither PGdx, in case of Hib as reported here, nor AhpC, in case of S. typhimurium  as well as in case of the acatalasaemic anaerobe Porphyromonas gingivalis W83 , are required for virulence; and v) they both elicit an immunogenic response when injected into infected models [17, 26, 31]. The latter observation also shows that virulence and immunity are not necessarily connected, as has also been reported e.g. for the major secretory protein of Legionella pneumophila, which results in strong protective immunity, but is apparently nonessential for virulence .
On the basis of the established physiologically relevant affinities for its reducing substrates, NADPH (Km = 37.4 μM) and NADH (Km = 55.0 μM), the NAD(P)H:peroxide oxidoreductase activity, detected here in crude extracts of both hktE- pgdx- H. influenzae Rd and its wild-type parent, could be of some relevance for the parasite to control its peroxide levels. The affinities, however, for either the simplest peroxide H2O2 (Km = 1.1 mM) or the organic peroxide t-BOOH (Km = 5.6 mM) are so low as to question whether these peroxides are the real in vivo substrates for the NAD(P)H:peroxide oxidoreductase activity. Moreover, we have shown here in Fig. 2 that hktE- pgdx- H. influenzae Rd as well as hktE- pgdx- Hib Eagan are totally deprived of H2O2-scavenging activity, meaning that, not only the so-called NAD(P)H peroxidase, but also other hydroperoxidases potentially expressed by H. influenzae, such as the thiol peroxidases Bcp and Tpx , are not involved in scavenging endogenously-generated H2O2. In this respect, the determination of the kinetic parameters for Bcp and Tpx would be of great value to clarify this issue.
A decade ago, Coves et al.  reported the NAD(P)H: H2O2 oxidoreductase activity in cell-free E. coli extracts; biochemical evidence was provided that such activity was distinct from H2O2-removal catalyzed by KatG and AhpR. The apparent Km values of the E. coli NAD(P)H peroxidase for its reducing substrates were within 30–40 μM , which agree well with our measurements for the H. influenzae Rd NAD(P)H peroxidatic activity. Unfortunately, because contaminating catalase activity biased the specific decomposition of H2O2, no estimation of the binding affinity for H2O2 of the E. coli NAD(P)H peroxidase was provided and no further comparison with the H. influenzae activity reported here is currently possible.
Hydroperoxidase-deficient (katG- katE- ahpR-) E. coli progressively grows slower in rich Luria-Bertani broth and can only grow for two generations in M9 minimal medium supplemented with all 20 amino acids . On the contrary, hydroperoxidase-deficiency (hktE- pgdx-) inflicted in either an Rd or an Eagan background resulted in wild-type growth, generation after generation, in rich sBHI broth, while in chemically defined MIc medium supplemented with all 20 amino acids, a slight aerobic growth defect is manifested as the postponement of nearly wild-type exponential growth to lower-than-wild-type stationary phase cell densities. These results thus imply that endogenously-generated H2O2 is bacteriocidal (mutagenic) to E. coli, while being rather bacteriostatic to H. influenzae. This difference in cytotoxic behaviour of H2O2 can not be attributed to quantitative differences, since we have previously reported that aerobically grown H. influenzae Rd cells produce H2O2 at a similar rate (~12.4 μM/s) as has been established for E. coli [11, 19]. Two plausible explanations, however, can be put forth to address this issue. First, since H2O2 by itself is not mutagenic, the rate of formation of mutagenic hydroxyl radicals derived from H2O2 adjacent to the genomic DNA molecule of E. coli may be higher compared to that nearby the H. influenzae genome. Secondly, the H. influenzae DNA mismatch repair system may be more efficient in repairing its oxidatively damaged DNA than is the E. coli counterpart, either on the basis of pure kinetics or because of a difference in sensitivity towards H2O2-mediated inactivation. In this regard, it is interesting to note that the human DNA mismatch repair system for example is highly sensitive to H2O2-mediated inactivation, even at noncytotoxic levels of H2O2 . The present characterization of hydroperoxidase-deficient H. influenzae Rd and Hib Eagan suggests that the wild-type strains should be highly robust against H2O2-stress. How, then, can it be explained that H. influenzae is more vulnerable to oxygen toxicity compared to other inhabitants of the human nasopharynx [4, 9]? First of all, since we have assessed here cytotoxicity of only one product (H2O2) of the reaction of oxygen with the cell's redox centers, the possibility remains that growth of H. influenzae is directly affected by oxygen toxicity because of intrinsic vulnerability against O2•-. D'Mello et al.  indeed reported that growth of H. influenzae is highly affected by O2•--stress, as evidenced by the absence of growth of a SOD-deficient Hib strain under fully aerated conditions. Secondly, taken into account the highly fastidious nature and the highly condensed genome of H. influenzae, O2•-- and H2O2-mediated protein inactivation could result in a number of auxotrophies, which can not be relieved under certain culture conditions. In this respect, we consider the basis and diversity of auxotrophies imposed upon H. influenzae by either O2•-- or H2O2-stress to be important topics for further research.
By generating mutants of H. influenzae Rd and the virulent strain Hib Eagan defective in both HktE and PGdx, we were able to show that these two hydroperoxidases, a catalase and a peroxiredoxin, account for the majority of scavenging of metabolically-generated H2O2. No other H2O2-removal activities appear to be of physiological significance. Yet, in vitro kinetic assays revealed that hktE- pgdx- H. influenzae Rd still produce NAD(P)H:peroxide oxidoreductase activity. Although this may represent a detoxifying activity, the NAD(P)H:peroxide oxidoreductase appears to be irrelevant for in vivo H2O2-scavenging because of its high Km-value (1.1 mM) when considering physiological steady-state H2O2-concentrations (20–150 nM, as estimated for E. coli [36, 37]). In the absence of hydroperoxidase activity, aerobic growth is fundamentally affected only in case of limiting amino acid/vitamin availability, implying that the continuous stream of H2O2 generated during H. influenzae's aerobic metabolism affects biosynthetic functions, while, apparently, causing DNA damage which not overkills the cells' DNA repair machinery. In agreement with these ex vivo growth studies, in the infant rat model of bacteremia, the double hktE- pgdx- mutation in the Hib background did not result in attenuated virulence indicating that HktE and PGdx, and more in general H2O2-scavenging, are not important for virulence in this model of infection.
Restriction endonucleases were obtained from New England Biolabs (Beverly, MA). DNA purification from gel or solution was carried out using either the Qiaquick DNA Extraction or PCR Purification Kit (Qiagen, Crawley, UK). Ligations were performed using T4 DNA ligase (Promega, Madison, WI). Plasmid DNA was prepared by the alkaline lysis method on either a small scale  or a 30-ml scale using the Qiagen Plasmid Purification Kit.
Brain heart infusion broth (BHI) was prepared from a dehydrate (Difco, Becton Dickinson and Company, Franklin Lakes, NJ) and autoclaved. To this medium, a Haemophilus test medium supplement (Oxoid, Hampshire, UK), containing V-factor (NAD) and X-factor (hemin), was added according to the manufacturers' instructions to prepare sBHI broth. H. influenzae specific minimal medium (MIc medium) was prepared essentially as described by Herriott et al. . The MIc medium used in this study contained 50 μM of oxidized glutathione, unless indicated otherwise, and was supplemented with a Haemophilus test medium supplement according to the manufacturers' instructions. The amino acid/vitamin supplement used in this study was purchased from Athena Environmental Sciences (Baltimore, MD) and is composed of 19 amino acids (40 μg/ml; no methionine (note that MIc medium already contains methionine)), the vitamins riboflavin, niacinamide, pyridoxine-HCl and thiamine (10 μg/ml each), magnesium sulfate (240 μg/ml), ferrous sulfate heptahydrate (25 μg/ml) and glucose (4 mg/ml). Oxygen-free media were generated using a Coy chamber (Coy Laboratory products, Inc.). To prepare agar plates, 1.8% agar was added to the sBHI or MIc liquid growth media before autoclaving.
Bacterial strains and growth conditions
E. coli TOP10 (Invitrogen, Paisley, UK) was used as host for cloning. E. coli strains and clones were cultured at 37°C in Luria-Bertani medium on an orbital shaker rotating at 200 rpm. When appropriate, 100 μg of ampicillin and/or 25 μg of chloramphenicol were added per ml of either solid or liquid E. coli culture media.
Wild-type strain H. influenzae Rd was purchased from the American Type Culture Collection (Manassas, VA). Strain AB2593 (Rd hktE::mini-Tn10 Cm) was kindly provided by William R. Bishai (Department of Medicine, Devision of Infectious Diseases, Johns Hopkins University School of Medicine). H. influenzae type b strain Eagan was kindly provided by A. Wright (Tufts University, Boston).
Cultures were routinely grown at 37°C in a candle extinction jar without shaking. When appropriate, 2 μg of chloramphenicol and/or 6 μg of ampicillin were added per ml of either liquid or solid H. influenzae culture media. Growth curves were monitored in the absence of antibiotics and starter cultures were always derived from overnight precultures which were diluted 1:50 to 1:100 to an optical density at 600 nm (OD600) of ~0.005. Aerobic growth was monitored under aerobic conditions as described previously . For each growth experiment, three independent experiments were performed with duplicates and the mean of a single representative set of duplicates (± the standard error of the mean (SEM)) is plotted in the figures.
For anaerobic-to-aerobic shift experiments, overnight precultures were diluted 1:50 to 1:100 in oxygen-free growth medium to an OD600 of ~0.005 and these subcultures were then grown anaerobically to an OD of ~0.15. Anaerobic cultures were prepared in a Coy chamber under an atmosphere of 85% N2-10% H2-5% CO2. The cultures were subsequently shaken (200 rpm) in atmospheric conditions and OD600 readings were recorded at one hour intervals as described previously . In the case of aerobic-shift growth experiments in the presence of non-enzyme or catalase based H2O2 scavenging, pyruvate (added from a buffered sterile stock solution to a final concentration of 0.75%; Sigma-Aldrich, St. Louis, MO) or bovine catalase (1,000 Units/ml; Sigma-Aldrich) were added to the culture media.
Construction of bacterial mutants
A hktE- pgdx-H. influernzae Rd mutant was constructed by the integrative disruption method using the acatlasaemic strain AB2593 as a recipient. Briefly, plasmid pSG4.0, a TOPO-XL derivative containing 4.0-kb of H. influenzea Rd subgenomic DNA encompassing the 726-bp pgdx gene (plus 1.4-kb upstream and 2.0-kb downstream) , was linearized with Acc I, which cuts the plasmid once at base pair 206 of the pgdx gene. The PCR amplified and Acc I-digested ampicillin resistance cassette of plasmid pACYC177 (forward primer: 5'-CGTCGAC TTCTTGAAGACGAAAG-3'; reverse primer: CGTCGAC TTACCAATGCTTAATC-3'; Acc I sites are underlined) was ligated into the Acc I linearized pSG4.0 plasmid. The resulting pgdx::Amp R knockout out plasmid was used as a template for PCR to amplify the entire mutated pgdx locus (forward primer: 5'-CGCGGATCCTGCCTGAACTTTCGCGTAATA-3'; reverse primer: 5'-CGCGGATCCTGTTTGATTTGGCGGATGTA-3'). This DNA was then used to transform the competent AB2593 recipient strain using the MIV method . Integration of the linear pgdx::Amp r knockout-out fragment by homologous recombination was selected for on the basis of ampicillin and chloramphenicol resistance, under anaerobic conditions. The disruption was confirmed by PCR and Western analysis (Fig. 1).
An analogous methodology was used in order to construct strain pgdx- H. influenzae type b Eagan by using the wild-type Hib strain as the recipient. In order to construct strain hktE- pgdx- H. influenzae type b Eagan, chromosomal DNA prepared from AB2593 was used to transform strain pgdx- H. influenzae type b Eagan by the MIV method , and ampicillin/chloramphenicol resistant transformants were selected under anaerobic conditions. Integrative disruption of the hktE gene was analyzed by PCR and confirmed by assaying catalase activity in whole cells as described in ref. . The disruption of the pgdx gene was once more confirmed by PCR and Western analysis (Fig. 1).
Both adjacent genes of pgdx are transcribed in opposite directions . Therefore, we believe that pgdx is not part of an operon, and, consequently, insertional inactivation of pgdx is expected to cause no polar effects. Moreover, other illegitimate events due to the insertional inactivation process are unlikely because the pgdx locus, contained in the interrupted PCR-amplicon used for the integrative disruption strategy, of wild-type and hktE- pgdx- double mutant strains was entirely PCR amplified and sequenced (data not shown). No substitutions or deletions/insertions apart from the integrated ampicillin resistance cassette have become apparent.
Overnight anaerobically grown precultures were diluted 1:50 to1:100 in either sBHI or MIc medium to an OD600 of ~0.005 and then grown microaerobically (non-shaking candle extinction jar) to an OD600 of 0.75 (late exponential phase). The following manipulations were then performed inside the Coy chamber. Using a sterile cotton swab, cells were inoculated onto the entire surface of either sBHI or MIc plates. Round sterile filters (5.2-mm diameter) were placed in the center of the plates and spotted with 5 μl of 3% H2O2. The plates were placed in an anaerobic jar and incubated for two days at 37°C. The diameter of the zone of complete inhibition was recorded in millimeters. The experiments were performed in triplicate; mean values are plotted with error bars representing the SEM.
H2O2 scavenging by whole cells
Overnight anaerobically grown precultures were diluted 1:50 to1:100 in sBHI medium to an OD600 of ~0.005 and then grown microaerobically (non-shaking candle extinction jar) to an OD600 of 0.15. Cells were pelleted in a microcentrifuge, washed twice, and resuspended in 0.5 ml room temperature phosphate-buffered saline to an OD600 of 0.15. An equal volume of a 3 μM H2O2 solution was then added to the cells to initiate the H2O2 scavenging reaction. At intervals, 200-μl samples were removed, and the reactions were terminated (i.e. the cells were removed) by filtering the reaction mixtures with sterile Millex-GV13 0.22-μm-pore-size filter units (Millipore Products Division, Bedford, Mass.). Residual H2O2 was then assayed by using the Amplex red hydrogen peroxide/peroxidase assay kit (Molecular Probes, Eugene, Oreg.) as described before .
NAD(P)H:peroxide oxidoreductase activity measurements
The standard assay for NAD(P)H:peroxide oxidoreductase activity is based on the t-BOOH-dependent oxidation of NADPH, measured at room temperature by the decrease in absorbance at 340 nm (ε340(NADPH) = 6220 cm-1 M-1). A Uvikon 943 double beam UV-visible spectrophotometer (Kontron Instruments, Watford, UK) was used for the spectrophotometric measurements. Each assay mixture contained in a final volume of 0.5 ml, 150 μM NADPH, 20 mM t-BOOH, 2.5 mg of crude extract (which was cleared of small metabolites by a HiPrepTM 26/10 desalting column (Amersham Biosciences, Freiburg, Germany)), and 50 mM Tris-HCl, pH 7.0. In case of affinity measurements of the reducing substrates NADPH and NADH, the fixed concentration of t-BOOH used was 20 mM. In case of affinity measurements of the oxidizing substrates t-BOOH and H2O2, the fixed concentration of NADPH used was 400 μM. Protein concentration was determined by the Bradford method  with bovine serum albumin as a standard.
Wild-type Hib and mutants were cultured anaerobically (GasPak150 TM in a BBL GasPakPlus generator with a catalyst (Baxter Diagnostics Inc., Medford, MA)) in BHI broth to an OD490 of 0.2 to 0.4. The strains were diluted in phosphate-buffered saline (Gibco, Paisley) with 0.1% gelatin (PBSG) to give ~200 colony-forming units (CFU)/100 μl. Counts were confirmed by plating onto BHI agar without antibiotics (data not shown). Approximately 200 CFU of each strain were intraperitoneally inoculated into 5-day-old Sprague-Dawley infant rats. At 48 hours, the rats were bled, and a 5-μl tail vein blood sample was diluted 1:200 in PBSG and cultured anaerobically on BHI agar. Colony counts of recovered Eagan and mutants were compared. Values are means ± standard error of at least four experiments.
This work was supported by the Fonds voor Wetenschappelijk Onderzoek -Vlaanderen (research grant 434534). We want to thank Tine Blomme and Wendy Rotthier for excellent technical assistance.
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