Table 1 The GenBank Coordinates of observed Brucella gene differentials. GenBank coordinates of 102 differential open reading frames identified in the three sequenced Brucella species (B. abortus 9-941, B. melitensis 16 M and B. suis 1330) along with their names, sizes and predicted functions.
From: Molecular targets for rapid identification of Brucella spp
B. suis 1330 | Â | B. melitensis 16 M | B. abortus 9-941 | Â | Â |
|---|---|---|---|---|---|
Chr | Gene Name | Gene Name | Gene Name | Gene Size | Gene Function |
1 | BR0221 (232958 .. 233407) | Â | BruAb1_0216 (234314 .. 234763) | 450 | transcriptional regulator, MerR family |
1 | BR0389 (397661 .. 397933) | Â | BruAb1_0414 (419791 .. 419519) | 273 | hypothetical protein |
1 | BR0390 397923 .. 398030 | Â | Not annotated 419781 .. 419888 | 108 | hypothetical protein |
1 | BR0588 581318 .. 581986 | Â | BruAb1_0609 602821 .. 603489 | 669 | protease, putative |
1 | BR0589 582008 .. 583282 | Â | BruAb1_0610 603511 .. 604785 | 1275 | major capsid protein, HK97 family |
1 | BR0590 583447.. 584013 | Â | BruAb1_0611 604950 .. 605516 | 567 | conserved hypothetical protein |
1 | BR0591 584010 .. 584348 | Â | BruAb1_0612 605513 .. 605851 | 339 | conserved hypothetical protein |
1 | BR0592 584345 .. 584512 | Â | BruAb1_0613 605848 .. 606381 | 168/534 | hypothetical protein |
1 | BR0593 584472 .. 584879 | Â | BruAb1_0613 605848 .. 606381 | 408/534 | conserved hypothetical protein |
1 | BR0952 (924995 .. 925828) | Â | Â | 834 | amino acid ABC transporter, permease protein |
1 | BR0953 (925831..926553) | Â | Â | 723 | amino acid ABC transporter, permease protein |
1 | BR0954 (926569..926748) | Â | Â | 180 | hypothetical protein |
1 | BR1060 (1030564 .. 1031664) | BMEI0926 957356 .. 957958 | Â | 1101/603 | multidrug resistance protein A, HlyD family secretion protein |
1 | BR1057 (1025909 .. 1026703) | BMEI0929 961675 .. 962442 | Â | 795/767 | diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) |
1 | Â | BMEI0900 933957..934199 | BruAb1_1088 (1071663..1072043) | 243/380 | hypothetical protein |
1 | BR1846 (1777721 .. 1778557) | Â | Â | 837 | hypothetical protein |
1 | BR1852 1782720 .. 1784648 | Â | BruAb1_1831 1799556 .. 1801508 | 1929/1952 | transcriptional regulator, Cro/CI family |
1 | BR1853 1784645 .. 1785319 | Â | BruAb1_1832 1801505 .. 1802179 | 675 | AzlC family protein |
1 | Â | BMEI1661 (1713088 .. 1713834) | Â | 747 | recombinase |
1 | Â | BMEI1674 1724077 .. 1724829 | BruAb1_0274 (279593 .. 280345) | 753 | hypothetical protein |
1 | Â | BMEI1675 (1724950 .. 1725186) | BruAb1_0273 279278 .. 279472 | 237/194 | hypothetical protein |
1 | Â | BMEI1676 (1725529 .. 1726137) | BruAb1_0271 278285 .. 278893 | 609 | hypothetical protein |
1 | Â | BMEI1677 (1726408 .. 1726872) | BruAb1_0270 277475 .. 278014 | 465/539 | hypothetical protein |
1 | Â | BMEI1678 (1726944 .. 1727234) | BruAb1_0269 277188 .. 277478 | 291 | hypothetical protein |
1 | Â | BMEI1679 (1727300 .. 1727545) | BruAb1_0268 276877 .. 277122 | 246 | hypothetical protein |
1 | Â | BMEI1680 1727623 .. 1727868 | BruAb1_0267 (276554 .. 276799) | 246 | hypothetical protein |
1 | Â | BMEI1681 1727932 .. 1728408 | BruAb1_0266 (276014 .. 276490) | 477 | hypothetical protein |
1 | Â | BMEI1682 1728405 .. 1728890 | BruAb1_0265 (275532 .. 276017) | 470/486 | hypothetical protein |
1 | Â | BMEI1683 (1729275 .. 1729823) | BruAb1_0264 274599 .. 275147 | 549 | zinc-dependent metallopeptidase |
1 | Â | BMEI1684 1729845 .. 1730009 | BruAb1_0263 274246 .. 274602 | 165/357 | hypothetical protein |
1 | Â | BMEI1685 1730353 .. 1730586 | BruAb1_0262 (273836 .. 274069) | 234 | hypothetical protein |
1 | Â | BMEI1686 (1730670 .. 1731023) | BruAb1_0261 273399 .. 273752 | 354 | hypothetical protein |
1 | Â | BMEI1687 (1731087 .. 1731293) | BruAb1_0260 273129 .. 273335 | 207 | hypothetical protein |
1 | Â | BMEI1688 (1731290 .. 1731880) | BruAb1_0259 272653 .. 273132 | 591/479 | hypothetical protein |
1 | Â | BMEI1689 (1731871 .. 1732350) | BruAb1_0258 272071 .. 272550 | 480 | hypothetical protein |
1 | Â | BMEI1690 (1732392 .. 1732697) | BruAb1_0257 271724 .. 272029 | 306 | hypothetical protein |
1 | Â | BMEI1691 (1732898 .. 1734790) | BruAb1_0256 269642 .. 271523 | 1893/1887 | hypothetical membrane spanning protein |
1 | Â | BMEI1692 (1734940 .. 1736856) | BruAb1_0255 267576 .. 269492 | 1917 | flagellar protein FlgJ |
1 | Â | BMEI1693 (1737057 .. 1737266) | BruAb1_0254 267166 .. 267375 | 210 | hypothetical protein |
1 | Â | BMEI1694 (1737368 .. 1738384) | BruAb1_0253 266048 .. 267064 | 1017 | hypothetical protein |
1 | Â | BMEI1695 (1738538 .. 1739155) | BruAb1_0252 265457 .. 265894 | 618/438 | hypothetical protein |
1 | Â | BMEI1696 (1739125 .. 1740654) | BruAb1_0251 263780 .. 265308 | 1530/1529 | hypothetical membrane spanning protein |
1 | Â | BMEI1697 (1740651 .. 1741532) | BruAb1_0250 262902..263783 | 882 | virulence-associated protein E |
1 | Â | BMEI1698 (1741529 .. 1741843) | BruAb1_0249 262591 .. 262905 | 315 | hypothetical protein |
1 | Â | BMEI1699 (1741840 .. 1742049) | BruAb1_0248 262385 .. 262594 | 210 | hypothetical protein |
1 | Â | BMEI1700 (1742050 .. 1742268) | BruAb1_0247 262166 .. 262384 | 219 | hypothetical protein |
1 | Â | BMEI1701 1742369 .. 1742641 | BruAb1_0246 261652 .. 262098 | 262/446 | hypothetical protein |
1 | Â | BMEI1702 (1742779 .. 1743975) | BruAb1_0245 260459 .. 261655 | 1197 | transposase |
2 | BRA0227 (214967 .. 215674) | BMEII1016 1054886 .. 1055593 | Â | 708 | protease I |
2 | BRA0362 343695 .. 344903 | Â | Â | 1209 | site-specific recombinase, phage integrase family |
2 | BRA0363 345188 .. 345418 | Â | Â | 231 | DNA-binding protein, putative |
2 | BRA0364 345499 .. 346557 | Â | Â | 1059 | RepA-related protein |
2 | BRA0365 (347606 .. 347932) | Â | Â | 327 | hypothetical protein |
2 | BRA0366 (347935 .. 349578) | Â | Â | 1644 | TrbL protein |
2 | BRA0367 (349581 .. 349763) | Â | Â | 183 | hypothetical protein |
2 | BRA0368 (349766 .. 350557) | Â | Â | 792 | TrbJ protein |
2 | BRA0369 350655 .. 350807 | Â | Â | 153 | hypothetical protein |
2 | BRA0370 (350825 .. 351049) | Â | Â | 225 | hypothetical protein |
2 | BRA0371 (351052 .. 351270) | Â | Â | 219 | TraC protein |
2 | BRA0372 351940 .. 352320 | Â | Â | 381 | TraJ protein |
2 | BRA0373 352317 .. 354269 | Â | Â | 953 | TraI protein, putative |
2 | BRA0374 (354676 .. 356100) | Â | Â | 1425 | hypothetical protein |
2 | BRA0375 (356254 .. 357279) | Â | Â | 1026 | hypothetical protein |
2 | BRA0376 (357313 .. 358038) | Â | Â | 726 | hypothetical protein |
2 | BRA0377 (358217 .. 359938) | Â | Â | 1722 | conserved hypothetical protein |
2 | BRA0378 (360180 .. 361004) | Â | Â | 825 | hypothetical protein |
2 | BRA0379 (361149 .. 361343) | Â | Â | 195 | DNA-damage-inducible protein J, putative |
2 | BRA0418 (402846 .. 403826) | BMEII0849 885138 .. 885878 | Â | 981/740 | GDP-4-dehydro-d-rhamnose reductase |
2 | BRA0419 (403810 .. 404880) | BMEII0848 884084 .. 885154 | Â | 1071 | GDP-mannose 4,6-dehydratase |
2 | BRA0420 405144 .. 406394 | BMEII0847 (882570 .. 883886) | Â | 1250/1317 | glycosyltransferase |
2 | BRA0421 406415 .. 407650 | BMEII0846 (881314 .. 882537) | Â | 1236/1224 | glycosyltransferase, group 1 family protein |
2 | BRA0422 407647 .. 408843 | BMEII0845 (880193 .. 881317) | Â | 1197/1125 | lipopolysaccharide n-acetylglucosaminyltransferase |
2 | BRA0423 (408914 .. 409636) | BMEII0844 879463 .. 880122 | Â | 723/660 | outer membrane protein, 31 kDa Found in B. neotomae |
2 | BRA0424 (410033 .. 410647) | BMEII0843 878500 .. 879003 | Â | 615/504 | acetyltransferase, CysE/LacA/LpxA/NodL family |
2 | BRA0425 (410659 .. 411921) | BMEII0842 877115 .. 878377 | Â | 1263 | hypothetical protein |
2 | BRA0426 (411918 .. 412535) | BMEII0841 876576 .. 877118 | Â | 618/543 | hypothetical protein |
2 | BRA0427 (412532 .. 413413) | BMEII0840 875548 .. 876504 | Â | 882/957 | glycosyltransferase involved in cell wall biogenesis |
2 | BRA0428 (413410 .. 414537) | BMEII0839 874562 .. 875626 |  | 1128/1065 | undecaprenyl-phosphate α-n-acetylglucosaminyl transferase |
2 | BRA0429 414830 .. 416323 | BMEII0838 (872719 .. 874224) | Â | 1494/1506 | succinoglycan biosynthesis transport protein exot |
2 | BRA0430 416339 .. 417352 | BMEII0837 (871690 .. 872703) | Â | 1014 | glycosyltransferase, group 2 family protein |
2 | BRA0431 (417308 .. 418549) | BMEII0836 870493 .. 871734 | Â | 1242 | dTDP-4-dehydrorhamnose 3,5-epimerase |
2 | BRA0432 418666 .. 420045 | BMEII0835 (868997 .. 869920) | Â | 1380/924 | glycosyltransferase, group 1 family protein |
2 | BRA0433 420083 .. 421444 | BMEII0834 (867598 .. 868959) | Â | 1362 | glutamate-1-semialdehyde 2,1-aminomutase |
2 | BRA0434 421423 .. 422757 | BMEII0833 (866285 .. 867619) | Â | 1335 | conserved hypothetical protein |
2 | BRA0435 422878 .. 423939 | BMEII0832 (865103 .. 866170) | Â | 1062/1068 | UDP-glucose 4-epimerase |
2 | BRA0436 423939 .. 425291 | BMEII0831 (863751 .. 865064) | Â | 1353/1314 | conserved hypothetical protein |
2 | BRA0437 (425254 .. 425778) | BMEII0830 863234 .. 863788 | Â | 525/555 | dTDP-4-dehydrorhamnose 3,5-epimerase |
2 | BRA0438 426099 .. 427400 | BMEII0829 (862282 .. 862944) | Â | 1302/663 | methyltransferase, putative |
2 | BRA0438 426099 .. 427400 | BMEII0828 (861644 .. 862210) | Â | 1302/567 | possible S-adenosylmethionine-dependent methyltransferase |
2 | BRA0439 427403 .. 428212 | BMEII0827 (860832 .. 861719) | Â | 480 | glucose-1-phosphate cytidylyltransferase |
2 | BRA0541 (521842 .. 522066) | Â | BruAb2_0681 692179 .. 692403 | 225 | hypothetical protein |
2 | BRA0630 (610688 .. 611938) | Â | BruAb2_0596 605152 .. 606402 | 1251 | amino acid dehydrogenase, putative |
2 | BRA0631 (612027 .. 612788) | Â | BruAb2_0595 604302 .. 605063 | 762 | amino acid ABC transporter |
2 | BRA0632 (612944 .. 613717) | Â | BruAb2_0594 603373 .. 604146 | 774 | amino acid ABC transporter, |
2 | BRA0633 (613902 .. 615005) | Â | BruAb2_0593 602085 .. 603188 | 1104 | conserved hypothetical protein |
2 | BRA0634 615107 .. 615556 | Â | BruAb2_0592 (601534 .. 601982) | 450 | transcriptional regulator, AsnC family |
2 | BRA0635 615836 .. 617563 | Â | BruAb2_0591 (599527 .. 601254) | 1728 | twin-arginine translocation signal domain protein |
2 | BRA0636 (617674 .. 618876) | Â | BruAb2_0590 598292 .. 599416 | 1203/1125 | beta-ketoadipyl CoA thiolase |
2 | BRA0749 731323 .. 732192 | Â | BruAb2_0483 (484959 .. 485828) | 870 | sugar ABC transporter, permease protein, putative |
2 | BRA0907 888804 .. 890204 | Â | BruAb2_0326 (326911 .. 328311) | 1401 | conserved hypothetical protein |
2 | BRA1096 1082617 .. 1083330 | Â | BruAb2_1035 1037839 .. 1038552 | 714 | transcriptional regulator, putative |
2 | BRA0553 (532630 .. 534594) | BMEII0717 755374 .. 757398 | Â | 1965/2025 | hemagglutinin, cell wall surface protein, putative |