Designation of intimins in this study | Designation of intimins in previous studies (References) | ORF length (bp) | Reference strain | Serotype | Origin | Accession number | Genetic relationship identities |
---|---|---|---|---|---|---|---|
α1 | α (4) and α1 (5) | 2820 | E2348/69 | O127:H6 | Human | M58154 | 87% |
α2 | α (4) and α2 (5) | 2820 | E. coli | O125:H6 | Human | AF530555 | 87% |
β1 | β (4) and β1 (8) | 2820 | RDEC1 | O15:H- | Rabbit | AF200363 | 84% |
ξR/β2B | ξ (14) and β2 (8) | 2820 | KB411 | ONT:HNT | Bovine | AF530556 | 88% |
ξR/β2B | ξ (14) and β2 (8) | 2820 | FV359 | O119:H6 | Human | AJ715407 | 88% |
δ/β2O | δ (4) and β2 (5) | 2820 | BL152.1 | O86:H34 | Human | AJ875027 | 87% |
κ | κ (6) | 2820 | 6044/95 | O118:H5 | Human | AJ308552 | 87% |
γ1 | γ (4) and γ1(5) | 2805 | EDL933 | O157:H7 | Human | AF071034 | 86% |
γ2/θ | γ2 (5) and θ (13) | 2808 | CL-37 | O111:H8 | Human | AF449418 | 84% |
ε1 | ε(5) | 2847 | PMK5 | O103:H2 | Human | AF116899 | 92% |
νR/ε2 | ν (14) and ε2 (GenBank AF530554) | 2847 | VR64/4 | O2related:H19 | Ovine | AF530554 | 94% |
ζ | ζ (13) | 2817 | 4795/95 | O84:H4 | Human | AJ271407 | 86% |
η1 | η (6) | 2847 | CF11201 | O125:H- | Human | AJ308550 | 98% |
η2 | new (this study) | 2847 | H03/53199a | ONT:H45 | Human | AJ876652 | 100% |
ι1 | ι (6) | 2814 | 7476/96 | O145:H4 | Human | AJ308551 | 88% |
μR/ι2 | μ (14) and ι2 (GenBank AF530553) | 2814 | VR45 | OR:H- | Ovine | AF530553 | 83% |
λ | λ (8, 14) | 2817 | EPEC-68.4 | O34:H- | Human | AJ715409 | 86% |
μB | μ (8) | 2808 | EPEC-373 | O55:H51 | Human | AJ705049 | 87% |
νB | ν (8) | 2823 | IH1229a | O10:H- | Human | AJ705050 | 82% |
ξB | ξ (8) | 2847 | STEC-B49 | O80:H- | Bovine | AJ705051 | 91% |