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Table 3 Predicted DtxR-regulated operons in C. diphtheriae

From: Prediction of DtxR regulon: Identification of binding sites and operons controlled by Diphtheria toxin repressor in Corynebacterium diphtheriae

Synonym

Gene

Orthologue

Product

DIP2158

 

COG1131

ABC-type transport system permease and ATPase component

DIP2159

 

COG1131

ABC-type transport system permease and ATPase component

DIP2160

-

COG3321

Polyketide synthase modules and related proteins

DIP2161*

-

COG1020

Non-ribosomal peptide synthetase modules and related proteins

DIP0586

iucA

Pfam04183

Catalyse discrete steps in biosynthesis of the siderophore aerobactin

DIP0587

-

-

Putative membrane protein

DIP0588

-

-

Putative membrane protein

DIP1059

fepC

COG1120

ABC-type cobalamin/Fe3+-siderophores transport systems

DIP1060

fepG

COG4779

ABC-type enterobactin transport system

DIP1061*

fepD

COG0609

ABC-type Fe3+-siderophore transport system

DIP2162

ddpA

COG0747

ABC-type peptide transport system periplasmic component

DIP2163

ddpB

COG0601

ABC-type peptide/nickel transport systems permease components

DIP2164

ddpC

COG1173

ABC-type peptide/nickel transport systems permease components

DIP2165

dpdD

COG0444

ABC-type peptide/nickel transport systems ATPase component

DIP0169

lraI

COG0803

ABC-type metal ion transport system, periplasmic component

DIP0170

znuC

COG1121

ABC-type Mn/Zn transport systems, ATPase component

DIP0171

znuB

COG1108

ABC-type Mn2+/Zn2+ transport systems, permease components

DIP0172

znuB

COG1108

ABC-type Mn2+/Zn2+ transport systems, permease components

DIP0173

lraI

COG0803

ABC-type metal ion transport system, periplasmic component

DIP2106

mdlB

COG1131

ABC-type multidrug transport system, ATPase and permease component

DIP2107

mdlB

COG1131

ABC-type multidrug transport system, ATPase and permease component

DIP0625

htaa

Pfam04213

Haemin transporter associated protein

DIP0626

hmuT

COG4558

ABC-type haemin transport system

DIP0627

hmuU

COG0609

ABC-type Fe3+-siderophore transport system

DIP0628

hmuV

COG4559

ABC-type haemin transport system

DIP0629*

htaa

Pfam04213

Haemin transporter associated protein

DIP1519*

htaa

pfam04213

Haemin transporter associated protein

DIP1520*

htaa

pfam04213

Haemin transporter associated protein

DIP2303

dps

COG0783

Starvation inducible DNA-binding protein

DIP2304

-

COG0266

Formamidopyrimidine-DNA glycosylase

DIP2305

-

COG0063

Predicted sugar kinase

DIP1510

xerD

COG4974

Site-specific recombinase

DIP1288

-

-

Conserved hypothetical protein

DIP1289

uup

COG0488

ATPase components of ABC transporters with duplicated ATPase domains

DIP1290

-

COG2151

Predicted metal-sulfur cluster biosynthetic enzyme

DIP1291

iscU

COG0822

NifU homolog involved in Fe-S cluster formation

DIP1292

csd

COG0520

Selenocysteine lyase

DIP1293

sufC

COG0396

ABC-type transport system involved in Fe-S cluster assembly

DIP1294

-

COG0719

ABC-type transport system involved in Fe-S cluster assembly

DIP1295

sufB

COG0719

ABC-type transport system involved in Fe-S cluster assembly

DIP1296*

deoR

COG2345

DeoR family transcriptional regulator

DIP0370

-

-

Putative succinate dehydrogenease (cytochrome b)

DIP0371

-

COG1053

Succinate dehydrogenase/fumarate reductase

DIP0372

-

COG0479

Succinate dehydrogenase/fumarate reductase

DIP0373

-

-

Putative membrane protein

DIP0374

-

-

Putative membrane protein

DIP0375

-

-

Putative membrane protein

DIP0376

-

-

Putative membrane protein

DIP0377

-

-

Putative membrane protein

DIP1864

ctaD

COG0843

Heme/copper-type cytochrome/quinol oxidases

DIP1865

nrdF1

COG0208

Ribonucleotide reductase

DIP2330

-

-

Putative membrane protein

DIP2331

-

COG1012

NAD-dependent aldehyde dehydrogenases

DIP0124*

-

Pfam03929

Uncharacterized iron-regulated membrane protein (DUF337)

DIP0622

-

-

Putative membrane protein

DIP0623

metA

COG2021

Homoserine acetyltransferase

DIP0624

-

-

Putative membrane protein

DIP0415

-

Pfam01022

Bacterial regulatory protein

DIP0539

-

COG3839

ABC-type sugar transport systems

DIP0168

-

-

Putative glycosyl transferase

DIP0417

-

-

Putative membrane protein

DIP0142

-

-

Hypothetical protein

DIP0143

-

-

-

DIP0144

tra8

COG2826

Transposase and inactivated derivatives

DIP2271

-

-

Putative membrane protein

DIP2272

-

COG3764

Sortase (surface protein transpeptidase)

DIP0699

secA

COG0653

Preprotein translocase subunit SecA (ATPase

DIP0700

-

-

Hypothetical protein

DIP0540*

secY

Pfam00344

Eubacterial secY protein

DIP0541

Adk

COG0563

Adenylate kinase and related kinases

DIP0542

mapA

 

Methionine aminopeptidase

DIP0543

-

-

Sialidases or neuraminidases;

DIP0544

erfK

Pfam03734

This family of proteins contains a conserved histidine and cysteine

DIP0545

infA

COG0361

Translation initiation factor 1 (IF-1)

DIP0546

rpsM

COG0099

Ribosomal protein S13

DIP0547

rpsK

COG0100

Ribosomal protein S11

DIP0548

rpsD

COG0522

Ribosomal protein S4 and related proteins

DIP0549

rpoA

COG0202

DNA-directed RNA polymerase

DIP0550

rplQ

COG0203

Ribosomal protein L17

DIP0551

truA

COG0101

Pseudouridylate synthase

  1. Note: * Indicate the genes reported be regulated by DtxR. Genes listed together belongs to same operon.