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Table 2 Comparison of amino acid identity in the oriC region with the corresponding M. paratuberculosis sequence.

From: Genomic homogeneity between Mycobacterium avium subsp. avium and Mycobacterium avium subsp. paratuberculosis belies their divergent growth rates

 

M. avium

M. leprae

M. tuberculosis

M. smegmatis

S. coelicolor

C. glutamicum

gidB

97% (98%)

66% (75%)

73% (83%)

Not Found

50% (64%)

51% (64%)

dnaN

100% (100%)

85% (88%)

86% (91%)

80% (89%)

51% (67%)

48% (69%)

rpmH

97% (100%)

91 % (95%)

91% (93%)

91% (95%)

81% (87%)

89% (93%)

Unknown (AAF33691)

100% (100%)

73% (82%)

85% (88%)

Not Found

64% (71%)

Not Found

dnaA

99% (99%)

87% (89%)

88% (90%)

78% (84%)

68% (78%)

53% (67%)

recF

97% (98%)

78% (87%)

76% (85%)

73% (84%)

55% (70%)

53% (71%)

gyrB

99% (100%)

90% (95%)

90% (94%)

88% (92%)

65% (79%)

72% (82%)

rnpA

94% (97%)

62% (76%)

60% (74%)

Not Found

41% (57%)

38% (56%)

unknown (AAF33696)

100% (100%)

78% (85%)

79% (88%)

70% (82%)

39% (51%)

33% (47%)

unknown (AAF33697)

98% (98%)

Not Found

64% (73%)

Not Found

Not Found

Not Found

unknown (AAF33698)

99% (99%)

75% (81%)

82% (88%)

Not Found

34% (50%)

42% (62%)

  1. Figures are reported as percent identity with percent similarity indicated in parenthesis. Blastp was done at the NCBI site except for M. avium, which was done at the TIGR site using tblastn. Not found indicates that the gene sequence is not available in public databases.