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Table 3 Homologues of aminoglycoside resistance genes detected in the human gut microbiota via PCR techniques

From: A degenerate PCR-based strategy as a means of identifying homologues of aminoglycoside and β-lactam resistance genes in the gut microbiota

Accession #

Gene description

Closest homologue

E value

% identity

aac (6)

    

AAA25680.1

AG 6′-N-acetyltransferase

Pseudomonas fluorescens

4 e-48

98

WP_006234103.1

Hypothetical protein Colaer00186

Collinsella aerofaciens

0.0

95

AAS45464.1

6′-N-acetyltransferase

A. baumannii

3e-33

75

aac (6′)- Ie-aph (2″)

    

WP_002304968.1

Phosphotransferase

E. faecium

9e-108

100

WP_001028140.1

Acetyltransferase GNAT

S. aureus

1e-107

99

WP_001028143.1

Acetyltransferase GNAT

S. aureus

1e-107

99

WP_010729367.1

Bifunctional AAC/APH partial sequence

E. faecium

5e-106

99

AAX82584.1

Bifunctional AG modifying enzyme

Enterococcus faecalis

2e-112

100

WP_002417297.1

6′ AG acetyltransferase

E. faecalis

3e-111

97

AFR11868.1

Bifunctional AG 6′-N acetytransferase/2′-AG phosphotransferases

S. epidermidis

1e-43

99

AFM29914.1

Gentamycin resistance protein

Enterococcus sp.

7e-45

97

aph (2″) Id

    

3SG8_A

Chain A crystal structure AG 2′ phosphotransferases

E. casseliflavus

1e-110

98

3N4T_A

Aph2″ chain a

E. casseliflavus

2e-110

99

AAT77696.1

AG modifying enzyme

E. faecium

1e-68

94

Aph (2″)-Ic

    

3TDVA

AG phosphotransferase

Enterococcus gallinarum

2e-83

97

ant (2″) Ia

    

YP_005176240.1

AG 2′–O-adenyltransferase

Pasturella mutocida

2e-97

100

WP_000314377.1

2′ AG nucleotidlytransferase

A. baumannii

3e-94

99

WP_000946493.1

2′ AG

A. baumannii

1e-94

99

ACJ47203.1

AG adenyltransferase

E. coli

6e-94

99

ACA48663.14

AG adenyltransferase

Morganella morganii

2e-96

99

aac (3)-VI

    

AAA16194.1

aac 3–6

Enterobacter cloacae

2e-05

77

WP_001642188.1

AG acetyltransferase

S. enterica subsp enterica

2e-20

98

  1. AG: aminoglycoside. Gene names are in bold.