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Table 1 Genes of the genome island and assigned functions in the metabolism of monoterpenes in Castellaniella defragrans 65Phen

From: The oxygen-independent metabolism of cyclic monoterpenes in Castellaniella defragrans 65Phen

Protein_id

Proteine detection methoda

2D fold change/LC enrichment levelb

Gene annotation

Related gene product

E value

% identity

Organism

Accession no.

CDM25240

n.d.

n.d.

Hypothetical protein

4E-60

59

Thauera terpenica 58Eu

EPZ16239

CDM25241

LC

++

Acyl-CoA dehydrogenase protein

0.0

82

Thauera terpenica 58Eu

EPZ16240

CDM25242

LC

0

Molybdopterin-binding OR

3E-70

74

Thauera terpenica 58Eu

EPZ16227

CDM25243

n.d.

n.d.

Tyrosine/serine phosphatase

1E-58

48

Thauera linaloolentis 47Lol

ENO83508

CDM25244

LC

0

2,4-dienoyl-CoA reductase

0.0

87

Thauera terpenica 58Eu

EPZ16243

CDM25245

n.d.

n.d.

NADH:flavin oxidoreductase

1E-179

68

Thauera terpenica 58Eu

EPZ16244

CDM25246

2D/LC

3.0/++

3-hydroxyacyl-CoA dehydrogenase

5E-167

82

Azoarcus sp. KH32C

YP_007598290

CDM25247

n.d.

n.d.

IS4 family transposase

0.0

63

Thiomonas sp. FB-6

WP_018915433

CDM25248, MrcH

n.d.

n.d.

MaoC-like dehydratase

2E-36

62

Azoarcus sp. KH32C

YP_007598291

CDM25249, MrcG

n.d.

n.d.

MaoC-like dehydratase

6E-50

67

Thauera terpenica 58Eu

EPZ16257

CDM25250, MrcF

LC

++

Perillyl-CoA hydratase

0.0

58

Thauera terpenica 58Eu

EPZ16258

CDM25251, MrcE

2D/LC

18/++

4-isopropenyl-2-oxo-cyclohexane-1-carboxyl-CoA hydrolase

4E-167

88

Azoarcus sp. KH32C

YP_007598294

CDM25252, MrcD

2D/LC

3.0/++

2-hydroxy-4-isopropenyl-cyclohexane-1-carboxyl-CoA dehydrogenase

1E-153

85

Azoarcus sp. KH32C

YP_007598295

CDM25253, MrcC

2D

2,3

2,4-dienoyl reductase

0.0

86

Thauera terpenica 58Eu

EPZ16261

CDM25254, MrcB

LC

++

Acyl-CoA dehydrogenase

0.0

90

Azoarcus toluclasticus

WP_018990727

CDM25255, MrcA

LC

++

Oxidoreductase, FAD-binding

0.0

73

Azoarcus toluclasticus

WP_018990723

CDM25256

2D/LC

19/++

(R)-specific enoyl-CoA hydratase

1E-88

85

Thauera terpenica 58Eu

EPZ15051

CDM25257

LC

0

Citrate lyase

6E-141

73

Thauera terpenica 58Eu

EPZ15052

CDM25258

LC

++

Acyl-CoA dehydrogenase

0.0

92

Thauera terpenica 58Eu

EPZ15053

CDM25259

LC

++

RND efflux transporter

0.0

62

Thauera terpenica 58Eu

EPZ15054

CDM25260

LC

++

RND efflux transporter

0.0

80

Thauera terpenica 58Eu

EPZ15055

CDM25261

LC

++

RND efflux transporter

4E-142

68

Thauera terpenica 58Eu

EPZ15056

CDM25262

LC

++

RND efflux transporter

0.0

81

Thauera terpenica 58Eu

EPZ15057

CDM25263

LC

++

Acetoacetyl-CoA synthetase

0.0

84

Thauera terpenica 58Eu

EPZ15058

CDM25264

n.d.

n.d.

Enoyl-CoA hydratase

9E-136

76

Thauera terpenica 58Eu

EPZ15059

CDM25265, GeoC

LC

++

Perillate--CoA ligase

0.0

71

Thauera terpenica 58Eu

EPZ15060

CDM25266

LC

0

Hypothetical protein

4,3

52

Fusarium graminearum PH-1

XP_382023

CDM25267, GeoA

2D/LC

42/++

Geraniol dehydrogenase

0.0

84

Thauera terpenica 58Eu

EPZ14350

CDM25268

LC

++

Hypothetical protein

8E-117

74

Thauera terpenica 58Eu

EPZ14349

CDM25269

n.d.

n.d.

Hypothetical protein

2E-97

69

Thauera terpenica 58Eu

EPZ14348

CDM25270

n.d.

n.d.

Hypothetical protein

6E-32

66

Thauera terpenica 58Eu

EPZ14347

CDM25271

n.d.

n.d.

Thioesterase

2E-33

46

Magnetospirillum magneticum

YP_420191

CDM25272, LDI

LC

++

LDI precursor protein

8E-14

25

Stereum hirsutum FP-91666 SS1

EIM80109

CDM25273

n.d.

n.d.

Hypothetical protein

5E-85

43

Gordonia paraffinivorans

WP_006900876

CDM25274

n.d.

n.d.

Hypothetical protein

5E-07

30

Gordonia paraffinivorans

WP_006900845

CDM25275

LC

++

Acyl-CoA dehydrogenase

4E-106

54

Azoarcus toluclasticus

WP_018990670

CDM25276

n.d.

n.d.

Hypothetical protein

4E-40

40

Glaciecola punicea

WP_006005307

CDM25277

n.d.

n.d.

Hypothetical protein

5E-21

58

Pseudomonas sp. 19-rlim

AEO27370

CDM25278

n.d.

n.d.

Hypothetical protein

1E-69

62

Pseudomonas sp. 19-rlim

AEO27371

CDM25279

LC

++

Hypothetical protein

1E-120

68

Pseudomonas sp. 19-rlim

AEO27372

CDM25280

n.d.

n.d.

MarR transcriptional regulator

7E-81

83

Thauera terpenica 58Eu

EPZ16291

CDM25281, GeoB

2D/LC

15/++

Geranial dehydrogenase

0.0

91

Thauera terpenica 58Eu

EPZ16290

CDM25282

LC

++

Acyl-CoA dehydrogenase

0.0

89

Thauera terpenica 58Eu

EPZ16289

CDM25283

n.d.

n.d.

LuxR family transcriptional regulator

0.0

59

Thauera terpenica 58Eu

EPZ16271

CDM25284, CtmG

LC

++

Hypothetical protein

5E-35

39

Azoarcus sp. KH32C

YP_007598506

CDM25285, CtmF

LC

++

NADH:ferredoxin oxidoreductase

4E-147

56

Caulobacter sp. AP07

WP_007674692

CDM25286, CtmE

2D

6.3/++

Ferredoxin, 2Fe-2S

1E-32

50

Caulobacter crescentus CB15

NP_422318

CDM25287, CtmD

n.d.

n.d.

Hypothetical protein

4,1

38

Ochrobactrum sp. CDB2

WP_007881652

CDM25288, CtmC

n.d.

n.d.

Hypothetical protein

2,3

33

Bombus impatiens

XP_003489707

CDM25289, CtmB

2D/LC

3.4/++

Limonene dehydrogenase

4E-131

41

Deltaproteobacterium NaphS2

WP_006422074

CDM25290, CtmA

LC

++

Limonene dehydrogenase

5E-57

30

Deltaproteobacterium NaphS2

WP_006422074

CDM25291

LC

++

Acetyl-CoA acetyltransferase

0.0

79

Thauera terpenica 58Eu

EPZ16237

CDM25292

LC

0

MarR transcriptional regulator

2E-76

77

Thauera terpenica 58Eu

EPZ16235

CDM25293

n.d.

n.d.

Hypothetical protein

4E-24

56

Thauera terpenica 58Eu

EPZ16283

CDM25294

LC

++

Hypothetical protein

2E-83

68

Thauera terpenica 58Eu

EPZ16282

CDM25295

n.d.

n.d.

Hypothetical protein

6E-155

76

Thauera terpenica 58Eu

EPZ16281

CDM25296

n.d.

n.d.

MarR transcriptional regulator

5E-94

81

Thauera terpenica 58Eu

EPZ16280

CDM25297

n.d.

n.d.

Hypothetical protein

2E-168

72

Thauera terpenica 58Eu

EPZ16232

CDM25298

LC

++

Hypothetical protein

0.0

72

Thauera terpenica 58Eu

EPZ16231

CDM25299

LC

++

Acetyl-CoA acetyltransferase

0.0

90

Thauera terpenica 58Eu

EPZ16230

CDM25300

n.d.

n.d.

Acetyl-CoA hydrolase/transferase

0.0

74

Thauera terpenica 58Eu

EPZ16229

CDM25301

LC

++

Electron transfer flavoprotein

7E-133

78

Thauera terpenica 58Eu

EPZ16226

CDM25302

n.d.

n.d.

Electron transfer flavoprotein

7E-160

76

Azoarcus sp. KH32C

YP_007552025

  1. a2D, identified with 2D-SDS-PAGE and MALDI-TOF-MS; LC, identified with LC-ESI-MS/MS.
  2. b++ peptides only identified in α-phellandrene fraction, + increase in α-phellandrene fraction, 0 ratio remained unchanged.