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Table 1 Spacers characteristics used in this study

From: Mycobacterium abscessus multispacer sequence typing

Name

Genome position*

Framing genes*

PCR primers

PCR product size (bp)

Spacer 1

106145-106396

MAB_0104:enoyl-CoA hydratase/isomerise

F : GGGATGCGCAGATGACGGGG

506

MAB_0105c:oxidoreductase

R : GCTACCCCGAATGGGGCACG

Spacer 2

173727-173985

MAB_0176:antigen 85-A precursor

F : TCGAGTTTCCTCCGGGCGGT

438

MAB_0177:antigen 85-A/B/C precursor

R: AATCCAGGCAGAACGGCCGC

Spacer 3

422777-423027

MAB_0423c:hypothetical protein

F: GCCATTGCTGTCCGTGCGGT

344

MAB_0424:putative protease

R : GCCGCGAACAGGCCAAACAG

Spacer 4

494411-494670

MAB_0495c:hypothetical protein

F: CGCCCTTGCGCAGGAGTGAT

528

MAB_0496c:hypothetical protein

R: GCCTGGTTCGGACGGTGACG

Spacer 5

761805-762060

MAB_0761c:putative 3-hydroxyacyl-CoA dehydrogenase

F : ACCACATCGGCGAGCGTGTG

545

MAB_0762:hypothetical protein

R : CCAACACCGGGTCGCGGTAC

Spacer 6

771170-771436

MAB_0772c:hypothetical protein

F : CGTCGGTCTTGCCGACCGTC

600

MAB_0773:hypothetical protein

R : GGCGCCGACGATCTAGCACC

Spacer 7

880381-880639

MAB_0887c:hypothetical protein

F: CGGCAGTGCAAGGTGCGTTG

519

MAB_0888c:putative fumarylacetoacetase

R : GCACCGTGTCCGGTCCTCAG

Spacer 8

959422-959678

MAB_0950c:putative amino acid permease family protein

F: GGGGCGTATGCGCCGTTACC

474

MAB_0951:putative aminoglycoside phosphotransferase

R : CGAACGCGCTGTGATTCGGC

Spacer 9

1002935-1003200

MAB_0995:hypothetical protein

F : GGCCGCGACAAGCTGATCGT

684

MAB_0997c:hypothetical protein

R: ATGCAGGGCACCGTGCGTAG

Spacer 10

1216613-1216879

MAB_1201c:transcription elongation factor GreA

F: CGTTCTCGCGCAGGTCTCCC

517

MAB_1202c:hypothetical protein

R: CCGAACGATCCGTGCCGGTC

Spacer 11

1818877-1819188

MAB_1818:hypothetical protein

F: AGCCAACTGCCATGGCGCTT

495

MAB_1819c:hypothetical protein

R : ACCGAGACGTCATGCACCGC

  1. * With reference to M. abscessus ATCC 19977 genome.