Table 2 The sequence analysis of DGGE bands from the zebrafish GI tract
Phylum | Class | Family | Closest relative | Strain | GenBank accession no. | % similarity | Isolates (Band) |
|---|---|---|---|---|---|---|---|
Firmicutes | Â | Leuconostocaceae | Weissella cibaria | AC26 | KF515539 | 100 | L1 |
Leuconostoc holzapfelii | IMAU62126 | KF515541 | 97 | L3 | |||
Lactococcus raffinolactis | S56-2 | KF515542 | 100 | L4 | |||
Lactococcus lactis | LD11 | KF515543 | 100 | L5 | |||
Lactococcus plantarum | DSM 20686 | KF515544 | 99 | L6 | |||
Lactococcus lactis | SS11A | KF515548 | 99 | L10 | |||
Veillonellaceae | Veillonella sp. | S101 | KF515546 | 100 | L8 | ||
Streptococcaceae | Streptococcus sp. | LVRI-122 | KF515547 | 100 | L9 | ||
Proteobacteria | β-Proteobacteria | Burkholderiaceae | Limnobacter sp. | F3 | KF515551 | 98 | L13 |
Comamonadaceae | Comamonas sp. | SB20 | KF515554 | 99 | L16 | ||
γ-proteobacteria | Sinobacteraceae | Hydrocarboniphaga daqingensis | B2-9 | KF515549 | 97 | L11 | |
Moraxellaceae | Acinetobacter sp. | CHE4-1 | KF515550 | 100 | L12 | ||
Sphingomonadaceae | Citrobacter freundii | T7 | KF515552 | 95 | L14 | ||
Enterobacteriaceae | Pantoea rodasii | ORC6 | KF515553 | 100 | L15 | ||
Salmonella sp. | Co9936 | KF515555 | 96 | L17 | |||
Citrobacter werkmanii | HTGC | KF515556 | 98 | L18 | |||
Aeromonadaceae | Aeromonas caviae | BAB556 | KF515557 | 96 | L19 | ||
| Â | Â | Â | Uncultured bacterium | S2-2-660 | KF515540 | 100 | L2 |
| Â | Â | Â | Uncultured bacterium | B2-2 | KF515545 | 100 | L7 |