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Table 2 Renibacterium salmoninarum isolates haplotype identified using multilocus tandem repeat sequencing

From: Multilocus variable-number tandem-repeat genotyping of Renibacterium salmoninarum, a bacterium causing bacterial kidney disease in salmonid fish

Haplotype

Isolate name

Country of origin

Host species

Environment (wild/farmed fish)

Data of isolation

A

MT1470, MT1511b, MT2119c, MT2622c

Scotland

RT

FW, SW (F)

1994–2002

B

MT452a, MT839, MT1351, MT1363, MT1880, MT2979, MT3277a, MT3314, MT3315b, MT3402, N4245, N6642, N6552d, N6553d, N6694, N6765, N6863e, N6864e

Scotland, Norway

AS, RT

FW, SW (F)

1988–2009

C

MT2943, MT3320

Scotland

AS

SW (F)

2005–2008

D

MT3482, MT3483

Scotland

AS, RT

SW (F)

2009

E

N3769, N6695

Norway

AS, RT

FW, SW (F)

1997–2008

F

N5298

Norway

AS

SW (F)

2005

G

MT3106, MT3479, TERV

Scotland

AS, RT

FW, SW (F)

2006–2009

H

MT861

Scotland

AS

FW (F)

1990

I

MT1262

Scotland

AS

FW (F)

1992

J

ATCC33209

N. America

Chinook salmon

SW (F)

1974

K

MT3313

Scotland

RT

FW (F)

2008

L

MT444

Scotland

AS

SW (F)

1988

M

N5223

Norway

AS

SW (F)

2005

N

N6975

Norway

AS

SW (F)

2009

O

NCIMB1116

Scotland

AS

FW (W)

1960

P

NCIMB1114

Scotland

AS

FW (W)

1960

Q

N7443

Norway

AS

FW (W)

1985

  1. a,b,c,d,erepresent R. salmoninarum isolates from different disease outbreaks occurring on the same aquaculture site. RT – rainbow trout, AS – Atlantic salmon, FW – freshwater, SW – seawater, FA – farmed fish, W – wild wish.