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Table 5 List of 30 S. Typhimurium isolates used in the outbreak study

From: CRISPR-MVLST subtyping of Salmonella enterica subsp. entericaserovars Typhimurium and Heidelberg and application in identifying outbreak isolates

Isolate

Sequence type

PFGE-pattern ( XbaI)

PFGE pattern ( BlnI)

Outbreak cluster

04E02240

TST 59

JPXX01.0146

JPXA26.0172

0411PAJPX-1c

04E02241

TST 59

JPXX01.0146

JPXA26.0294

0411PAJPX-1c

04E02243

TST 59

JPXX01.0146

JPXA26.0172

0411PAJPX-1c

04E02295

TST 59

JPXX01.0146

JPXA26.0172

0411PAJPX-1c

04E02296

TST 59

JPXX01.0146

JPXA26.0172

0411PAJPX-1c

04E02297

TST 59

JPXX01.0146

JPXA26.0172

0411PAJPX-1c

04 F00368

TST 59

JPXX01.0146

JPXA26.0172

0411PAJPX-1c

04 F00376

TST 59

JPXX01.0146

JPXA26.0172

0411PAJPX-1c

04 F00381

TST 59

JPXX01.0146

JPXA26.0172

0411PAJPX-1c

04E02239

TST 59

JPXX01.0279

JPXA26.0172

0411PAJPX-1c

09E00857

TST 42

JPXX01.0302

JPXA26.0183

0905PAJPX-1

09E01235

TST 42

JPXX01.0302

JPXA26.0183

0905PAJPX-1

09E01308

TST 42

JPXX01.0302

JPXA26.0183

0905PAJPX-1

09E01333

TST 42

JPXX01.0302

JPXA26.0183

0905PAJPX-1

09E01424

TST 42

JPXX01.0302

JPXA26.0183

0905PAJPX-1

09E01666

TST 42

JPXX01.0302

JPXA26.0183

0905PAJPX-1

M09015209001A

TST 42

JPXX01.0302

JPXA26.0183

0905PAJPX-1

M09017319001A

TST 42

JPXX01.0302

JPXA26.0183

0905PAJPX-1

M09019457001A

TST 42

JPXX01.0302

JPXA26.0183

0905PAJPX-1

M09021164001A

TST 42

JPXX01.0302

JPXA26.0183

0905PAJPX-1

M09015294001A

TST 42

JPXX01.0047

-

-

M09019934001A

TST 42

JPXX01.0781

-

-

M09015723001A

TST 12

JPXX01.0604

JPXA26.0292

-

M09019606001A

TST 12

JPXX01.0604

JPXA26.0174

-

M09016911001A

TST 12

JPXX01.1214

-

-

09E00951

TST 13

JPXX01.0001

JPXA26.0530

-

M09019186001A

TST 13

JPXX01.0946

-

-

09E01471

TST 15

JPXX01.2095

-

-

M09016893001A

TST 19

JPXX01.0146

JPXA26.0291

-

M09017200001A

TST 60

JPXX01.0359

-

-

  1. The 10 isolates without cluster information represent the sporadic, or non-outbreak related, isolates used as controls in the study.