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Table 1 H. pylori haplotype as determined by MLS in 110 strains and by WGS in 7 strains, included in the in silico analysis

From: Phylogeographic evidence of cognate recognition site patterns and transformation efficiency differences in H. pylori: theory of strain dominance

Host

Location

Ethnic group

N

H. pylorihaplotypes

    

hpAfrica1

hpEurope

hspEAsia

hspAmerind

African (19)

Burkina Faso

Bantu

14

14

   

Senegal

Wolof

5

5

   

European (14)

Italy

Italian

1

 

1*

  

Germany

German

1

 

1*

  

UK

English

1

 

1*

  

Sweden

Swedish

1

 

1*

  

Spain

Spanish

10

 

10

  

Asian (12)

Japan

Japanese

1

  

1

 

Korea

Korean

11

  

11

 

Native American (44)

Peru

Peruvian

1

   

1*

Colombia

Huitoto

14

 

10

 

4

Venezuela

Piaroa

7

 

2

 

5*

Guahibo

3

 

3

  

Canada

Athabaskan

6

   

6

Canada/ USA

Inuit

13

 

4

 

9

Mestizo (20)

Venezuela

Mestizo

9

4

5

  

Colombia

Mestizo

11

1

10

  

North American (N = 1)

USA

North American

1

1*

   
  

All

110

25

48

12

25

  1. *Whole genome sequence strain.