Table 1 Operational taxonomic units (OTUs) of archaeal 16S rRNA gene sequences from feces of white rhinoceroses
From: Diversity of methanogens in the hindgut of captive white rhinoceroses, Ceratotherium simum
OTU | phylotype | No. of sequences | Nearest valid taxon* | % Sequence | Nearest uncharacterized | % Sequence |
|---|---|---|---|---|---|---|
| Â | Â | Â | Â | identity | clone | identity |
1 | W-Rhino1 | 2 | Methanosphaera stadtmanae | 96.3 | HM573412 | 99.4 |
1 | W-Rhino21 | 4 | Methanosphaera stadtmanae | 96.6 | HM573412 | 99.8 |
2 | W-Rhino8 | 4 | Methanomassiliicoccus luminyensis | 88.1 | HM038364 | 98.6 |
2 | W-Rhino22 | 2 | Methanomassiliicoccus luminyensis | 88.4 | HM038364 | 98.6 |
3 | W-Rhino25 | 5 | Methanomassiliicoccus luminyensis | 87.8 | JN030604 | 95.9 |
4 | W-Rhino33 | 3 | Methanomassiliicoccus luminyensis | 87.5 | JN030608 | 95.7 |
5 | W-Rhino15 | 6 | Methanocorpusculum labreanum | 95.5 | AB739382 | 95.9 |
5 | W-Rhino19 | 2 | Methanocorpusculum labreanum | 95.1 | AB739382 | 95.7 |
5 | W-Rhino20 | 5 | Methanocorpusculum labreanum | 95.1 | AB739382 | 96.0 |
5 | W-Rhino26 | 3 | Methanocorpusculum labreanum | 95.5 | AB739382 | 96.3 |
5 | W-Rhino30 | 2 | Methanocorpusculum labreanum | 95.1 | AB739382 | 96.0 |
5 | W-Rhino35 | 6 | Methanocorpusculum labreanum | 95.3 | AB739382 | 95.8 |
5 | W-Rhino44 | 1 | Methanocorpusculum labreanum | 95.4 | AB739382 | 95.9 |
5 | W-Rhino45 | 2 | Methanocorpusculum labreanum | 95.4 | AB739382 | 95.9 |
6 | W-Rhino4 | 3 | Methanobrevibacter smithii | 97.3 | AB739317 | 98.9 |
6 | W-Rhino7 | 5 | Methanobrevibacter smithii | 97.5 | AB739317 | 99.4 |
6 | W-Rhino13 | 1 | Methanobrevibacter smithii | 97.6 | AB739317 | 99.6 |
6 | W-Rhino16 | 7 | Methanobrevibacter smithii | 97.5 | AB739317 | 99.5 |
6 | W-Rhino23 | 11 | Methanobrevibacter smithii | 97.5 | AB739317 | 99.4 |
6 | W-Rhino28 | 4 | Methanobrevibacter smithii | 97 | AB739317 | 98.7 |
6 | W-Rhino34 | 4 | Methanobrevibacter smithii | 97.5 | AB739317 | 99.5 |
6 | W-Rhino36 | 1 | Methanobrevibacter smithii | 97.4 | AB739317 | 99.4 |
6 | W-Rhino38 | 1 | Methanobrevibacter smithii | 97.5 | AB739317 | 99.4 |
6 | W-Rhino39 | 1 | Methanobrevibacter smithii | 97.6 | AB739317 | 99.6 |
6 | W-Rhino41 | 2 | Methanobrevibacter smithii | 97.4 | AB739317 | 99.3 |
6 | W-Rhino42 | 1 | Methanobrevibacter smithii | 97.4 | AB739317 | 99.4 |
6 | W-Rhino46 | 1 | Methanobrevibacter smithii | 97.5 | AB739317 | 99.4 |
7 | W-Rhino2 | 3 | Methanocorpusculum labreanum | 95.4 | AB739382 | 96.2 |
7 | W-Rhino3 | 1 | Methanocorpusculum labreanum | 95.4 | AB739382 | 96.2 |
7 | W-Rhino5 | 5 | Methanocorpusculum labreanum | 95.2 | AB739382 | 96.2 |
7 | W-Rhino6 | 9 | Methanocorpusculum labreanum | 95.2 | AB739382 | 95.7 |
7 | W-Rhino9 | 4 | Methanocorpusculum labreanum | 95.4 | AB739382 | 96.2 |
7 | W-Rhino10 | 1 | Methanocorpusculum labreanum | 95.4 | AB541926 | 96.0 |
7 | W-Rhino11 | 3 | Methanocorpusculum labreanum | 95.1 | AB541926 | 95.8 |
7 | W-Rhino12 | 7 | Methanocorpusculum labreanum | 95.1 | AB541926 | 95.6 |
7 | W-Rhino14 | 2 | Methanocorpusculum labreanum | 95.2 | AB541926 | 95.8 |
7 | W-Rhino17 | 2 | Methanocorpusculum labreanum | 95.1 | AB739382 | 95.9 |
7 | W-Rhino18 | 1 | Methanocorpusculum labreanum | 95.3 | AB739382 | 96.1 |
7 | W-Rhino24 | 2 | Methanocorpusculum labreanum | 95.4 | AB739382 | 96.2 |
7 | W-Rhino27 | 1 | Methanocorpusculum labreanum | 95.6 | AB541926 | 96.0 |
7 | W-Rhino29 | 7 | Methanocorpusculum labreanum | 95.3 | AB739382 | 96.1 |
7 | W-Rhino31 | 1 | Methanocorpusculum labreanum | 95.3 | AB739382 | 96.1 |
7 | W-Rhino32 | 2 | Methanocorpusculum labreanum | 96.2 | AB739400 | 96.9 |
7 | W-Rhino37 | 5 | Methanocorpusculum labreanum | 95.3 | AB739382 | 96.1 |
7 | W-Rhino40 | 1 | Methanocorpusculum labreanum | 95.2 | AB739382 | 96.0 |
7 | W-Rhino43 | 3 | Methanocorpusculum labreanum | 95.4 | AB739382 | 96.2 |
7 | W-Rhino47 | 4 | Methanocorpusculum labreanum | 95.2 | AB739382 | 96.0 |
Totals | Â | 153 | Â | Â | Â | Â |