From: BactQuant: An enhanced broad-coverage bacterial quantitative real-time PCR assay
Species Name | Reaction efficiency | r2-value |
---|---|---|
Streptomyces violaceoruber | 93% | >0.999 |
Mycobacterium abscessus | 110% | >0.999 |
Mycobacterium bovis | 106% | >0.996 |
Mycobacterium chelonae | 101% | >0.999 |
Mycobacterium gastri | 104% | >0.999 |
Mycobacterium gordonae | 104% | >0.999 |
Mycobacterium fortuitum | 93% | >0.999 |
Mycobacterium kansasii | 107% | >0.999 |
Mycobacterium marinum | 110% | >0.990 |
Mycobacterium nonchromogenicum | 101% | >0.999 |
Mycobacterium phlei | 104% | >0.999 |
Mycobacterium smegmatis | 105% | >0.999 |
Mycobacterium vaccae | 120% | >0.999 |
Mycobacterium xenopi | 112% | >0.999 |
Bacteroides ureolyticus | 92% | >0.999 |
Bacteroides fragilis | 82% | >0.993 |
Chlamydia trachomatis | N/A | N/A |
Chlamydophila pneumoniae | N/A | N/A |
Thermus thermophilus | 97% | >0.999 |
Clostridium difficile | 88% | >0.987 |
Listeria monocytogenes | 104% | >0.999 |
Staphylococcus arlettae | 96% | >0.998 |
Staphylococcus capitis | 95% | >0.993 |
Staphylococcus cohnii | 104% | >0.999 |
Staphylococcus epidermidis | 96% | >0.999 |
Staphylococcus equorum | 85% | >0.997 |
Staphylococcus hominis | 108% | >0.999 |
Staphylococcus haemolyticus | 90–104% | >0.999 |
Staphylococcus kloosii | 98% | >0.999 |
Staphylococcus lugdunensis | 94% | >0.999 |
Staphylococcus saprophyticus | 87–98% | >0.999 |
Staphylococcus xylosus | 81–100% | >0.999 |
Streptococcus agalactiae | 98% | >0.998 |
Streptococcus pneumoniae | 98% | >0.999 |
Streptococcus viridans | 103% | >0.999 |
Enterococcus faecium | 91–111% | >0.999 |
Enterococcus faecalis | 90–100% | >0.998 |
Fusobacterium nucleatum | 90% | >0.999 |
Burkholderia pseudomallei | 103% | >0.999 |
Coxiella burnetti* | 100% | >0.998 |
Francisella tularensis | 100% | >0.999 |
Legionella pneumophila | 98% | >0.999 |
Neisseria gonorrhoeae | 95% | >0.997 |
Pseudomonas aeruginosa | 90–100% | >0.999 |
Pseudomonas mendocina | 93% | >0.999 |
Pseudomonas andersonii | 90% | >0.999 |
Pseudomonas otitidis | 93% | >0.999 |
Pseudomonas stutzeri | 86% | >0.999 |
Pseudomonas monteilii | 88% | >0.999 |
Pseudomonas azotofixans | 84% | >0.999 |
Pseudomonas mosselii | 92% | >0.999 |
Pseudomonas luteola | 91% | >0.999 |
Pseudomonas putida | 90% | >0.999 |
Pseudomonas fluorescens | 96% | >0.999 |
Pseudomonas taetrolens | 89% | >0.999 |
Pseudomonas fragi | 93% | >0.999 |
Pseudomonas syringae | 95% | >0.999 |
Pseudomonas pseudoalcaligenes | 93% | >0.999 |
Pseudomonas lundensis | 93% | >0.999 |
Pseudomonas anguiliseptica | 93% | >0.999 |
Cellvibrio gilvus | 92% | >0.999 |
Acinetobacter baumannii | 100–105% | >0.999 |
Arsenophonus nasoniae | 87% | >0.998 |
Budvicia aquatica | 88% | >0.999 |
Buttiauxella gaviniae | 107% | >0.999 |
Cedecea davisae | 97% | >0.999 |
Citrobacter freundii | 95% | >0.999 |
Cronobacter sakazakii | 96% | >0.999 |
Edwardsiella tarda | 106% | >0.999 |
Enterobacter cloacae | 89–111% | >0.999 |
Enterobacter aerogenes | 107% | >0.998 |
Escherichia vulneris | 93% | >0.999 |
Escherichia coli | 91–96% | >0.999 |
Ewingella americana | 97% | >0.999 |
Haemophilus influenzae | 91–110% | >0.999 |
Hafnia alvei | 93% | >0.999 |
Klebsiella oxytoca | 93% | >0.999 |
Klebsiella pneumoniae | 95–100% | >0.999 |
Kluyvera ascorbata | 100% | >0.999 |
Leclercia adecarboxylata | 93% | >0.999 |
Leminorella richardii | 94% | >0.999 |
Moellerella wisconsensis | 93% | >0.999 |
Moraxella catarrhalis | 91–106% | >0.999 |
Morganella morganii | 95% | >0.999 |
Obesumbacterium proteus | 114% | >0.994 |
Pantoea agglomerans | 93% | >0.999 |
Pectobacterium atrosepticum | 90% | >0.999 |
Photorhabdus asymbiotica | 96% | >0.999 |
Plesiomonas shigelloides | 93% | >0.999 |
Pragia fontium | 100% | >0.998 |
Proteus mirabilis | 98% | >0.999 |
Providencia rustigianii | 93% | >0.999 |
Rahnella aquatilis | 92% | >0.999 |
Raoultella ornithinolytica | 94% | >0.999 |
Salmonella enterica | 101% | >0.999 |
Salmonella enterica subsp. enterica serovar gallinarum | 95% | >0.998 |
Serratia liquefaciens | 94% | >0.999 |
Shigella dysenteriae | 98% | >0.999 |
Tatumella ptyseos | 101% | >0.999 |
Trabulsiella guamensis | 95% | >0.999 |
Yokenella regensburgei | 96% | >0.999 |
Yersinia enterocolitica | 98% | >0.999 |
Campylobacter jejuni | 89% | >0.999 |
Vibrio cholerae | 85% | >0.996 |
Borrelia burgdorferi | 90% | >0.999 |
Treponema denticola | 82% | >0.999 |