Table 1 Distribution of peptidoglycan metabolism genes among all of the domains of life and among 21 bacteria phyla
| Â | Bacteria phyla | GT28 | GT51 | GH23 | GH25 | GH73 | GH102 | GH103 | GH104 | Complete set |
|---|---|---|---|---|---|---|---|---|---|---|
Archae (n=101) | Â | 4 (3.9%) | 0 | 0 | 1 (0.9%) | 1 (1%) | 0 | 0 | 0 | 0 |
Viruses (n=103) | Â | 0 | 0 | 2 (1.9%) | 1 (0.9%) | 0 | 0 | 0 | 0 | 0 |
Eukaryotes (n=42) | Â | 5 (11.9%) | 2 (4.7%) | 3 (7.1%) | 5 (11.9%) | 0 | 0 | 1 (2.4%) | 0 | 1(2.4%) |
Bacteria (n=1398) | Â | 1342 (96%) | 1284 (91.8%) | 1224 (87.5%) | 419 (30%) | 707 (51%) | 467 (33%) | 528 (37.7%) | 95 (7%) | 1260 (90.1%) |
| Â | Actinobacteria (n=136) | 134 (99%) | 135 (99%) | 130 (95.6%) | 77 (56.6%) | 8 (6%) | 0 | 0 | 0 | 133 (97.8%) |
Aquificae (n=9) | 9 (100%) | 9 (100%) | 9 (100%) | 0 | 3 (33%) | 0 | 0 | 0 | 9 (100%) | |
Bacteroides-Chlorobi (n=59) | 58 (98%) | 59 (100%) | 53 (90%) | 25 (42.4%) | 40 (68%) | 0 | 0 | 0 | 57 (98%) | |
Chlamydia (n=27) | 27 (100%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
Chloroflexi (n=14) | 9 (64%) | 9 (64%) | 9 (64%) | 1 (7.1%) | 0 | 0 | 0 | 0 | 9 (64%) | |
Cyanobacteria (n=42) | 42 (100%) | 40 (95%) | 32 (76%) | 2 (4.7%) | 7 (17%) | 19 (45%) | 0 | 23 (55%) | 32 (76%) | |
Deferribacteres (n=3) | 3 (100%) | 3 (100%) | 3 (100%) | 0 | 0 | 0 | 3 (100%) | 0 | 3 (100%) | |
Deinococcus-Thermus (n=13) | 13 (100%) | 13 (100%) | 10 (77%) | 0 | 0 | 0 | 0 | 0 | 10 (77%) | |
Dictyoglomi (n=2) | 2 (100%) | 2 (100%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
Elusimicrobia (n=2) | 2 (50%) | 2 (100%) | 1 (50%) | 0 | 0 | 0 | 0 | 0 | 1 (50%) | |
Fibrobacteres-Acidobacteria (n=7) | 6 (86%) | 6 (86%) | 7 (100%) | 0 | 2 (29%) | 0 | 0 | 0 | 6 (86%) | |
Firmicutes (n=318) | 315 (99%) | 314 (99%) | 264 (83%) | 189 (59.4%) | 256 (81%) | 0 | 0 | 0 | 309 (97.2%) | |
Fusobacteria (n=5) | 5 (100%) | 5 (100%) | 3 (60%) | 3 (60%) | 2 (40%) | 0 | 0 | 0 | 5 (100%) | |
Nitrospirae (n=2) | 2 (100%) | 2 (100%) | 2 (100%) | 0 | 0 | 0 | 0 | 0 | 2 (100%) | |
Planctomycetes (n=6) | 3 (50%) | 0 | 0 | 0 | 0 | 1 (17%) | 0 | 0 | 0 | |
Proteobacteria (n=673) | 664 (99%) | 644 (96%) | 658 (98%) | 121 (18%) | 370 (55%) | 442 (66%) | 524 (78%) | 72 (11%) | 644 (96%) | |
Spirochaetes (n=27) | 27 (100%) | 26 (96%) | 26 (96%) | 1 (3.7%) | 11 (41%) | 4 (15%) | 0 | 0 | 26 (96%) | |
Synergistetes (n=3) | 3 (100%) | 2 (67%) | 3 (100%) | 0 | 0 | 0 | 0 | 0 | 2 (67%) | |
Tenericutes (n=32) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
Thermotogae (n=11) | 11 (100%) | 10 (91%) | 10 (91%) | 0 | 8 (73%) | 0 | 0 | 0 | 10 (91%) | |
Verrucomicrobia (n=4) | 4 (100%) | 1 (25%) | 2 (50%) | 0 | 0 | 0 | 0 | 0 | 0 | |
Unclassified (n=3) | 3 (100%) | 2 (67%) | 2 (67%) | 0 | 0 | 1 (33%) | 1 (33%) | 0 | 2 (67%) |