Figure 4

ClonalFrame 75% majority-rule consensus phylogenies with and without correction for recombination. The scale shows time in coalescent units. The phylogeny with recombination correction also shows for each isolate its proportion of ancestry for each genetic cluster determined by the Structure analyses. For K = 2 and K = 6, the different colors represent each cluster. The proportion of color shading for each bar represents the proportion of ancestry for the respective cluster. Vertical bars show the isolates assigned to clusters A and B when K = 2. Asterisk refers to bovine isolates; # refers to feline isolate.