Skip to main content

Table 2 Verification, by Sanger sequencing, of 12 polymorphic loci identified by Next Generation Sequencing (NGS) of E. histolytica genomes

From: A Multilocus Sequence Typing System (MLST) reveals a high level of diversity and a genetic component to Entamoeba histolytica virulence

Strain

Reference sequence

HM-1:1MSS

DS4-868

MS96-3382

Genbank accession number

Gene id

NGS

Sanger

NGS

Sanger

NGS

Sanger

XM_644365

EHI_103540

63883C

C

C

C

C

C/A

C/A

XM_645788

EHI_069570

120673G

G

G

A

A

A

A

XM_647032

EHI_134740

54882G

G

G

G

G

A

A

XM_651435

EHI_041950

9878A

A

A

A

A

C

C

XM_647310

EHI_065250

10296C 10297T

CT

CT

TC

TC

TC

TC

XM_647310

EHI_046600

6048A

A

A

C

C

C

C

XM_647170

EHI_166490

28371G

G

G/A

G

G

G/A

G/A

XM_652055

EHI_049680

91356A

A

A

A

A

C

C

XM_648588

EHI_188130

32841C

C

C

T

T

T

T

XM_001914355

EHI_083760

807T

T-x-G

T-x-G

T-x-G

T-x-G

T-x-A

T-x-A

784G

XM_647392

EHI_126120

105607A

A

A

A

A

G

G

XM_001913688

EHI_168860

11109G

G

G

A

A

A

A

  1. Verification of SNPs identified during Next Generation Sequencing of E. histolytica genomes.