Target organism | Primer set | Primer sequences 5' - 3' | Assay | Reference |
---|---|---|---|---|
Total bacteria | 520 F | AGCAGCCGCGGTAAT | qPCR | [14] |
799 R2 | CAGGGTATCTAATCCTGTT | |||
Fibrobacter | FibSuc3F | GCGGGTAGCAAACAGGAT TAGA | qPCR | [15] |
succinogenes | FibSuc3R | CCCCCGGACACCCAGTAT | ||
Ruminococcus | RumAlb3F | TGTTAACAGAGGGAAGCAAAGCA | qPCR | [15] |
albus | RumAlb3R | TGCAGCCTACAATCCGAACTAA | ||
Ruminococcus | RumFla3F | TGGCGGACGGGTGAGTAA | qPCR | [15] |
flavefaciens | RumFla3R | TTACCATCCGTTTCCAGAAGC T | ||
Genus | PrevGen4F | GGTTCTGAGAGGAAGGTCCCC | qPCR | [15] |
Prevotella | PrevGen4R | TCCTGCACGCTACTTGGCTG | ||
Streptococcus | StrBov2F | TTCCTAGAGATAGGAAGTTTCTTC GG | qPCR | [15] |
bovis | StrBov2R | ATG ATG GCA ACT AAC AAT AGG GGT | ||
Genus | Lacto 05 F | AGC AGT AGG GAA TCT TCC A | qPCR | [16] |
Lactobacillus | Lacto 04R | CGCCACTGGTGTTCYTCCATATA | ||
Total bacteria | GC + Eub340F | CGCCCGCCGCGCGCGGCGGGCGGGGCG GGGGCACGGGGGG TCCTACGGGAGGCAGCAG | DGGE | |
HDA2R | GTA TTA CCG CGG CTG CTG GCA C |