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Table 4 Identification of observed TRF combinations

From: Diversity and dynamics of Archaea in an activated sludge wastewater treatment plant

AluI a

RsaI a

Clone libraryb

RDP databasec

93

74

-

Unclassified Euryarchaota

142

Out of ranged

-

Methanosarcina

176

74

Methanosaeta

Methanosaeta

176

238/239

-

Methanomicrobia

176

Out of range

-

Unclassified Euryarchaota

184/185

74/77

Methanosaeta

Methanosaeta

   

Unclassified Euryarchaota

   

Thermoplasmatales

   

Methanomicrobiales

   

Methanosarcinales

184/185

142

-

Unclassified Euryarchaota

184/185

238/239

Methanosaeta

Methanosaeta

   

Unclassified Euryarchaota

   

Methanomicrobia

   

Methanosarcinales

184/185

259

ARC I

Unclassified Euryarchaota

   

Thermoplasmatales

   

Methanomicrobiales

184/185

Out of range

-

Unclassified Euryarchaota

   

Unclassified Archaea

   

Methanosarcinales

Out of range

74/77

-

Unclassified Euryarchaota

   

Unclassified Archaea

Out of range

238/239

-

Unclassified Euryarchaota

   

Methanosarcinales

Out of range

259

-

Unclassified Euryarchaota

  1. a Observed TRF combinations that are not included in the table were not found in the database nor in the clone library. b Identification by comparison with predicted TRF lengths of clone library sequences. c Identification by comparison with predicted TRF lengths of RDP database sequences. d Out of range: The TRF in the database or the clone library was either shorter than 50 bases or longer than 1020 bases and would therefore not have been detected.