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Table 4 Species with identical or similar hsp65 PRA but different groups in rpoB DPRA

From: Combined rpo B duplex PCR and hsp65 PCR restriction fragment length polymorphism with capillary electrophoresis as an effective algorithm for identification of Mycobacterial species from clinical isolates

rpo B Group

Species (type)

hsp 65 RFLP

  

Bst EII

Hae III

A

M. mucogenicum type 3

320 / 115 / 0

140 / 90 / 60 / 0

B

M. chitae type 1

320 / 115 / 0

140 / 90 / 60 / 0

A

M. mucogenicum type 2

320 / 115 / 0

145 / 65 / 60 / 0

E

M. terrae type 3

320 / 115 / 0

140 / 60 / 50 / 0

A

M. fallax type 1

320 / 115 / 0

185 / 145 / 0 / 0

E

M. terrae type 2

320 / 115 / 0

185 / 140 / 0 / 0

A

M. peregrinum type 2

235 / 210 / 0

140 / 125 /100/50

H

M. scrofulaceum type 1

235 / 210 / 0

145 / 130 / 95 / 0

D

M. kansasii type 6

235 / 130 / 85

130 / 105 / 70 / 0

E

M. gastri type 1

235 / 130 / 85

130 / 105 / 70 / 0

F

M. celatum type 2

235 / 130 / 85

130 / 105 / 80 / 0

D

M. kansasii type 1

235 / 210 / 0

130 / 105 / 80 / 0

F

M. malmoense type 2

235 / 210 / 0

145 / 105 / 80 / 0

E

M. simiae type 6

235 / 210 / 0

145 / 130 / 0 / 0

G

M. intermedium type 1

235 / 210 / 0

145 / 130 / 0 / 0

G

M. intracellulare type 3

235 / 210 / 0

145 / 130 / 0 / 0

F

M. interjectum

240 / 210 / 0

130 / 110 / 0

G

M. gordonae type 5

235 / 210 / 0

130 / 115 / 0 / 0