Table 3 Characterization of MSSA isolates from Nigeria by antibiotic susceptibility pattern, detection of antibiotic and virulence genes, spa typing and MLST
From: Antibiotic resistance and molecular epidemiology of Staphylococcus aureusin Nigeria
Isolate No | Location | Sample Or Clinical Diagnosis | Antibiotype | Antibiotic resistance genes | Toxin genes | spatype | MLST | Clonal Complex (CC) |
|---|---|---|---|---|---|---|---|---|
09-01760 | Ife | Wound Infection | PEN, CIP, SXT | - | lukPV, seh | t127 | CC1 | |
09-01823 | Ife | Wound Infection | PEN, OTE | tetK | lukPV, seh | t127 | ||
09-01785-1 | Ibadan | Conjunctivitis | PEN | - | lukPV, seh | t114 | ||
09-01787 | Maiduguri | Wound Infection | PEN, OTE | tetK | seh | t321 | 1 | |
09-01733 | Ife | Otitis media | PEN, SXT | - | lukPV | t311 | CC5 | |
09-01738 | Lagos | Urinary tract infection | PEN, ERY, OTE, CIP, SXT | tetM, mrsA | - | t311 | 5 | |
09-01777 | Ibadan | Wound Infection | PEN, CIP | - | - | t311 | ||
09-01815 | Maiduguri | Otitis media | PEN, ERY, OTE, SXT | tetM, mrsA | - | t311 | ||
09-01737 | Lagos | Semen (Infertility) | PEN, GEN, OTE, SXT | aacA-aphD, tetK | - | t951 | CC8 | |
09-01742 | Lagos | Unknown | PEN, OTE | tetK | - | t1617 | 8 | |
09-01780 | Ibadan | Conjunctivitis | PEN, SXT | - | - | t064 | ||
09-01796 | Maiduguri | Sputum (Unknown) | PEN, OTE, SXT | tetK | - | t064 | ||
09-01810 | Ife | Sputum (Unknown) | PEN, OTE, CIP, SXT | tetK | - | t1496 | ||
09-01817-1 | Maiduguri | Urinary tract infection | PEN, OTE, SXT | tetK | - | t1496 | ||
09-01819 | Maiduguri | Semen (Infertility) | PEN, OTE, SXT | tetK | - | t2812 | ||
09-01822 | Ife | Sputum (Unknown) | PEN, OTE, SXT | tetK | - | t1496 | ||
09-01734 | Ife | Unknown | PEN, OTE, SXT | tetK | - | t084 | CC15 | |
09-01736 | Lagos | Otitis media | OTE | tetM | - | t084 | ||
09-01750 | Ife | Nasal* | PEN, SXT | - | lukPV | t084 | ||
09-01751 | Ife | Nasal* | PEN, SXT | - | lukPV | t084 | 15-slv | |
09-01752 | Ife | Nasal* | SXT | - | lukPV | t084 | ||
09-01755 | Ife | Nasal* | PEN, OTE, SXT | tetK | - | t084 | ||
09-01756 | Ife | Nasal* | PEN, OTE, CIP, SXT | tetK | - | t084 | ||
09-01799 | Maiduguri | Otitis media | PEN, OTE, SXT | tetK | - | t084 | ||
09-01801 | Maiduguri | Otitis media | PEN, OTE, SXT | tetK | - | t084 | ||
09-01805 | Ife | Blood Infection | OTE | tetM | - | t084 | 15-slv | |
09-01820 | Ife | Wound Infection | PEN, SXT | - | - | t084 | ||
09-01821 | Ife | Wound Infection | PEN, OTE, SXT | tetK | - | t084 | ||
09-01824 | Ife | Wound Infection | CIP, SXT | - | - | t084 | ||
09-01788 | Maiduguri | Wound Infection | PEN, OTE, SXT | tetK | - | t2216 | ||
09-01798 | Maiduguri | Semen (Infertility) | PEN, OTE, SXT | tetK | - | t2216 | 15 | |
09-01804 | Maiduguri | Wound Infection | PEN, OTE, SXT | tetK | - | t2216 | ||
09-01806 | Ife | Unknown | PEN, SXT | - | - | t328 | ||
09-01813 | Ife | Wound Infection | PEN, SXT | - | - | t5387 | ||
09-01740 | Lagos | Wound Infection | PEN, CIP, SXT | - | lukPV | t318 | CC30 | |
09-01743 | Lagos | Wound Infection | CIP, SXT | - | lukPV | t318 | 30 | |
09-01747-2 | Lagos | Wound Infection | Susceptible to all antibiotics | - | lukPV | t318 | 30 | |
09-01779 | Ibadan | Wound Infection | PEN, CIP, SXT | - | lukPV | t021 | ||
09-01825 | Ife | Otitis media | PEN, CIP | - | - | t631 | ||
09-01732 | Ile-Ife | Unknown | PEN, SXT | - | lukPV | t159 | CC121 | |
09-01759 | Ile-Ife | Wound Infection | PEN, SXT | - | lukPV | t314 | ||
09-01797 | Maiduguri | Wound Infection | OTE | tetK | lukPV | t314 | ||
09-01826 | Ile-Ife | Otitis media | PEN | - | lukPV | t159 | 121 | |
09-01745 | Lagos | Semen (Infertility) | PEN, SXT | - | lukPV | t2304 | 121 | |
09-01781 | Ibadan | Wound Infection | PEN, OTE, SXT | tetK | lukPV | t2304 | ||
09-01761 | Ife | Wound Infection | PEN | - | lukPV | t355 | singleton | |
09-01762 | Ife | Wound Infection | PEN | - | lukPV | t355 | ||
09-01778 | Ibadan | Wound Infection | PEN, CIP | - | lukPV | t355 | ||
09-01790 | Maiduguri | Wound Infection | Susceptible to all antibiotics | - | - | t355 | 152 | |
09-01793 | Maiduguri | Wound Infection | PEN | - | lukPV | t355 | ||
09-01803 | Maiduguri | Wound Infection | PEN, OTE, SXT | tetK | lukPV | t355 | ||
09-01753 | Ife | Nasal* | PEN, SXT | - | etd | t3772 | 25 | singleton |
09-01754 | Ife | Nasal* | PEN, SXT | - | etd | t3772 | ||
09-01757 | Ife | Nasal* | PEN, SXT | - | etd | t3772 | ||
09-01802 | Maiduguri | Wound Infection | PEN, CIP | - | - | t939 | 45 | CC45 |
09-01792 | Maiduguri | Wound Infection | PEN, OTE | tetK | - | t458 | 97 | CC97 |
09-01800 | Maiduguri | Wound Infection | PEN, OTE, SXT | tetK | lukPV, etd | t934 | 80 | CC80 |