Target group (variable region) | Primer designation | Primer sequence (5'-3') | Amplicon size | Annealing temperature | DGGE gradient | Reference |
---|---|---|---|---|---|---|
Universal (V3) | F357-GC a 518R | TACGGGAGGCAGCAG ATTACCGCGGCTGCTGG | 217 | 55°C | 20-70% | Muyzer et al., 1993 |
Universal (V6-V8) | U968F-GC a L1401-R | AACGCGAAGAACCTTAC CGGTGTGTACAAGACCC | 489 | 55°C | 20-70% | Zoetendal et al., 1998 |
Bacteroides fragilis subgroup | Bfra 531F Bfra 766R-GCa | ATACGGAGGATCCGAGCGTTA CTGTTTGATACCCACACT | 293 | 65°C | 20-70% | Vanhoutte et al., 2006 |
Bifidobacterium | g-Bifid F g-Bifid R-GCa | CTCCTGGAAACGGGTGG GGTGTTCTTCCCGATATCTACA | 596 | 65°C | 40-70% | Matsukiu et al., 2002 |
Lactobacillus groupb | Lac 1 Lac2-GC a | AGCAGTAGGGAATCTTCCA ATTYCACCGCTACACATG | 380 | 61°C | 35-60% | Walter et al., 2001 |