Table 1 Taxonomic identification and phylogenetic affiliation of the excised and sequenced epiphytic (EP), washing water (WW) and cultivation water (CW) DGGE bands
DGGE band number | Closest matching strain in BLAST (accession number) Query coverage/Maximum identity | Phylogenetic affiliation | Correlation |
|---|---|---|---|
MX19 EP 1 | Uncultured Mycoplasma sp. clone MX19.9 (JF521606) 100/100 | Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae | M1m + M1b - |
MX19 EP 2 | Uncultured bacterium clone Del10081H12 (JF262029) 100/100 | Proteobacteria; Alphaproteobacteria; Caulobacterales; Hyphomonadaceae | M4 - |
MX19 EP 3 | Uncultured Phyllobacteriaceae bacterium clone MX19.12 (JF521607) 100/100 | Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae | M8 + |
MX19 EP 4 | Uncultured bacterium isolate TTGE gel band N68 (JN185170) 100/100 | Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae | M9 - |
MX19 EP 5 | Uncultured Labrenzia sp. clone DGGE band C (HE599215) 100/100 | Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae | M10 + |
MX90 EP 6 | Uncultured bacterium clone CD02003D03 (HM768522) 100/96 | Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae | M5 - |
MX90 EP 7 | Uncultured Phyllobacteriaceae bacterium clone MX19.12 (JF521607) 100/100 | Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae | M8 + |
MX90 EP 8 | Uncultured alphaproteobacterium clone TH_d327 (EU272970) 100/98 | Proteobacteria; Alphaproteobacteria; Rhizobiales, Hyphomicrobiaceae | M9 - |
MX90 WW 9 | Uncultured bacterium clone OTU017 (GU174663) 100/100 | Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae | M2 - |
MX164 EP 10 | Uncultured Mycoplasma sp. clone MX19.9 (JF521606) 100/96 | Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae | M1m + M1b - |
MX164 EP 11 | Uncultured Arcobacter sp. clone MX164.20 (JF521610) 100/100 | Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae | M2 + |
MX164 EP 12 | Uncultured proteobacterium clone Marsh_0_33 (JF980756) 100/100 | Proteobacteria; Alphaproteobacteria; Caulobacterales; Hyphomonadaceae | M3 - |
MX164 EP 13 | Acanthopleuribacter pedis type strain NBRC 101209 (AB303221) 100/93 | Acidobacteria; Holophagae; Acanthopleuribacterales | M5 - |
MX164 EP 14 | Hyphomicrobiaceae bacterium WPS10 (HQ638980) 100/98 | Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae | M8 - |
MX164 EP 15 | Uncultured bacterium clone I3A_12H (EU352599) 100/98 | Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae | M9 - |
MX164 EP 16 | Stappia sp. enrichment culture clone NKiNSO2 (EU983274) 100/95 | Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae | M10 - |
MX164 WW 17 | Uncultured Sneathiella sp. clone w-G7 (HQ727092) 100/97 | Proteobacteria; Alphaproteobacteria; Sneathiellales; Sneathiellaceae | M7 - |
MX263 EP 18 | Thalassomonas sp. UST061013-012 (EF587959) 100/100 | Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae | M7 - |
MX263 EP 19 | Uncultured Phyllobacteriaceae bacterium clone MX19.12 (JF521607) 100/100 | Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae | M8 + |
MX263 EP 20 | Uncultured Labrenzia sp. clone DGGE band C (HE599215) 100/100 | Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae | M10 + |
MX263 WW 21 | Uncultured Mycoplasma sp. clone MX263.1 (JF521605) 100/100 | Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae | M1m + M1b - |
MX263 CW 22 | Uncultured bacterium isolate DGGE gel band B12 (HQ875697) 100/93 | Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae | M3 - |
MX263 CW 23 | Alcanivorax dieselolei strain PM07 (HM596594) 100/100 | Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae | M6 - |
MX344 EP 24 | Uncultured Labrenzia sp. clone DGGE band C (HE599215) 100/100 | Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae | M10 + |
MX344 WW 25 | Ruegeria mobilis strain F4122 (HQ338148) 100/99 | Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae | M8 - |
MX344 CW 26 | Uncultured bacterium clone EMar8 (FR667032) 100/94 | Proteobacteria; Gammaproteobacteria; Alteromonadales | M4 - |
MX344 CW 27 | Uncultured bacterium clone W2-97 (HQ322761) 100/90 | Proteobacteria; Alphaproteobacteria | M7 - |