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Table 2 Select genes whose expression levels responded to short-term (30 min) perturbation with sodium chloride but not PEG8000 (FDR < 0.05, fold-difference > 2.0).

From: Transcriptome and membrane fatty acid analyses reveal different strategies for responding to permeating and non-permeating solutes in the bacterium Sphingomonas wittichii

Gene ID

Gene Product

Sodium chloride expression fold-change

Regulation type

Swit_0142

phospholipase D

3.7

Up

Swit_0692

extracellular solute-binding protein

2.8

Up

Swit_1507

17 kDa surface antigen

17

Up

Swit_1509

17 kDa surface antigen

9.3

Up

Swit_2132

peptidoglycan-associated lipoprotein

2.0

up

Swit_2278

OmpA/MotB domain-containing protein

3.6

up

Swit_2322

OmpA/MotB domain-containing protein

10

up

Swit_2933

superoxide dismutase

2.3

up

Swit_3739

chloride channel, core

2.1

up

Swit_3836

ECF subfamily RNA polymerase sigma-24 factor

2.7

up

Swit_3837

putative transmembrane anti-sigma factor

2.5

up

Swit_3924

ECF subfamily RNA polymerase sigma-24 factor

7.2

up

Swit_3925

two-component response regulator

3.5

up

Swit_3926

signal transduction histidine kinase

3.0

up

Swit_0657

glutamate synthase (NADPH) large subunit

2.6

down

Swit_0958

butyryl-CoA:acetate CoA transferase

2.2

down

Swit_0959

3-oxoacid CoA-transferase, A subunit

2.1

down

Swit_2399

methionine synthase (B12-dependent)

2.8

down

Swit_2400

methionine synthase (B12-dependent)

3.0

down

Swit_2401

5,10-methylenetetrahydrofolate reductase

2.8

down

Swit_2559

acyl-CoA synthetase

7.7

down

Swit_2694

glycine cleavage system aminomethyltransferase T

2.0

down

Swit_2696

glycine dehydrogenase subunit 1

2.2

down

Swit_2697

glycine dehydrogenase subunit 2

2.0

down

Swit_3903

diacylglycerol kinase, catalytic region

5.4

down

Swit_3907

fatty acid hydroxylase

3.4

down

Swit_3986

Glu/Leu/Phe/Val dehydrogenase, dimerisation region

2.1

down

Swit_4784

glutamate synthase (NADPH)

2.3

down