From: Patterns and regulation of ribosomal RNA transcription in Borrelia burgdorferi
Amplified gene/region | Primer Name | Sequence (5' → 3') | Amplicon (bp) |
---|---|---|---|
5S rRNA | 5SrRNAd | CCCTGGCAATAACCTACTC | 112 |
 | 5SrRNArc | CCCTGGTGGTTAAAGAAAAG |  |
16S rRNA | 16SrRNAd | GGCCCGAGAACGTATTCACC | 288 |
 | 16SrRNArc | CGAGCGCAACCCTTGTTATC |  |
 | 16SrRNAd2 | GTTCCAGTGTGACCGTTCAC | 295 |
 | 16SrRNArc2 | CTTAGAACTAACGCTGGCAG |  |
23S rRNA | 23SrRNAd | CCTCTTAACCTTCCAGCACC | 248 |
 | 23SrRNArc | GGTTAGGCTATAAGGGACCG |  |
tRNAIle | tRNAIled | GATCATAGCTCAGGTGGTTAG | 69 |
 | tRNAIlerc | GACCAGGATGAGTTGAACATC |  |
tRNAAla | tRNAAlad | GTTAAGGGACTCGAACCCTTG | 65 |
 | tRNAAlarc | GTTTAGCTCAGTTGGCTAGAG |  |
flaB | flaBd | TCATTGCCATTGCAGATTGTG | 278 |
 | flaBrc | ACCTTCTCAAGGCGGAGTTAA |  |
16S rRNA - tRNAAla | 16SrRNArc | CGAGCGCAACCCTTGTTATC | 683 |
 | tRNAAlad | GTTAAGGGACTCGAACCCTTG |  |
tRNAAla - tRNAIle | tRNAAlarc | GTTTAGCTCAGTTGGCTAGAG | 781 |
 | tRNAIled | GATCATAGCTCAGGTGGTTAG |  |
tRNAIle - 23S rRNA | tRNAIlerc | GACCAGGATGAGTTGAACATC | 2522 |
 | 23SrRNA3'd2 | CTTATTACAGACTAAGCCTAAACGTC |  |
23S rRNA - 5S rRNA | 23SrRNArc | GGTTAGGCTATAAGGGACCG | 1403 |
 | 5SrRNAd | CCCTGGCAATAACCTACTC |  |
5S rRNA - 23S rRNA | 5SrRNArc | CCCTGGTGGTTAAAGAAAAG | 631 |
 | 23SrRNA3'd2 | CTTATTACAGACTAAGCCTAAACGTC |  |