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Table 1 Oligonucleotide primers used in this study

From: Patterns and regulation of ribosomal RNA transcription in Borrelia burgdorferi

Amplified gene/region

Primer Name

Sequence (5' → 3')

Amplicon (bp)

5S rRNA

5SrRNAd

CCCTGGCAATAACCTACTC

112

 

5SrRNArc

CCCTGGTGGTTAAAGAAAAG

 

16S rRNA

16SrRNAd

GGCCCGAGAACGTATTCACC

288

 

16SrRNArc

CGAGCGCAACCCTTGTTATC

 
 

16SrRNAd2

GTTCCAGTGTGACCGTTCAC

295

 

16SrRNArc2

CTTAGAACTAACGCTGGCAG

 

23S rRNA

23SrRNAd

CCTCTTAACCTTCCAGCACC

248

 

23SrRNArc

GGTTAGGCTATAAGGGACCG

 

tRNAIle

tRNAIled

GATCATAGCTCAGGTGGTTAG

69

 

tRNAIlerc

GACCAGGATGAGTTGAACATC

 

tRNAAla

tRNAAlad

GTTAAGGGACTCGAACCCTTG

65

 

tRNAAlarc

GTTTAGCTCAGTTGGCTAGAG

 

flaB

flaBd

TCATTGCCATTGCAGATTGTG

278

 

flaBrc

ACCTTCTCAAGGCGGAGTTAA

 

16S rRNA - tRNAAla

16SrRNArc

CGAGCGCAACCCTTGTTATC

683

 

tRNAAlad

GTTAAGGGACTCGAACCCTTG

 

tRNAAla - tRNAIle

tRNAAlarc

GTTTAGCTCAGTTGGCTAGAG

781

 

tRNAIled

GATCATAGCTCAGGTGGTTAG

 

tRNAIle - 23S rRNA

tRNAIlerc

GACCAGGATGAGTTGAACATC

2522

 

23SrRNA3'd2

CTTATTACAGACTAAGCCTAAACGTC

 

23S rRNA - 5S rRNA

23SrRNArc

GGTTAGGCTATAAGGGACCG

1403

 

5SrRNAd

CCCTGGCAATAACCTACTC

 

5S rRNA - 23S rRNA

5SrRNArc

CCCTGGTGGTTAAAGAAAAG

631

 

23SrRNA3'd2

CTTATTACAGACTAAGCCTAAACGTC

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