Table 2 Putative cre sites present in the promoter region of some L. sake i genes up-regulated in the present study.
From: Global transcriptome response in Lactobacillus sakei during growth on ribose
Gene locus | Gene | cresite sequencea | Positionb | Co-transcribed genes/operonc | Gene locus |
|---|---|---|---|---|---|
LSA0123 | lsa0123 | TGAAAGCGTTACAA | -93 | ||
LSA0185 | galP | GAACATCGTTATCA | -46 | ||
LSA0200 | rbsU | GTAAACCGTTTTCA | -113 | rbsUDK | LSA0200-0202 |
LSA0254 | lsa0254 | TGTAAGCGTTTTAT | -56 | lsa0254-lsa0255-lsa0256_a | LSA0254-0256_a |
LSA0289 | xpk | CTATTACGATGACA | -8 | ||
LSA0292 | budC | TGTAACCGTTTTAA | -51 | ||
LSA0353 | lsa0353 | AGAAAGCGCTTATA | -102 | ||
LSA0370 | arcA | TGAAAGCGATTACC | -58 | arcA-arcB e -arcC-arcT e -arcD e | LSA0370-0374 |
LSA0449 | manL | TGTTAGCGTTTTTA | -56 | manL-manM-manN | LSA0449-0451 |
LSA0533 | iunH2 | AAAAAGCGTTCACA | -35 | ||
LSA0572 | tdcB | TGAAAACGTTCTAA | -134 | ||
LSA0608 | Glo AN | TGTAACCGTTTTAA | -100 | gloAN-gloAC | LSA0608-0609 |
LSA0649 | glpK | AGGAAACGTTTTCC | -42 | glpK-glpD-glpF | LSA0649-0651 |
LSA0664 | loxL1 | AGAAAGCGAGTACA | -82 | loxL1N-loxLI-loxL1C | LSA0664-0666 |
LSA0764 | galK | TGAAAGCGATTAAT | -30 | galK-galE1-galT-galM | LSA0764-0767 |
LSA0795 | deoC | TGAAAGCGTTAACA | -33 | deoC-deoB-deoD-lsa0798-lsa0799-deoR-pdp | LSA0795-0801 |
LSA0974 | pflB | TACGAACGCTTACA | -147 | pflB-pflA | LSA0974-0973 |
LSA1048 | fruR e | TGTAAACGATGACA | -39 | fruR e -fruK e -fruA | LSA1048-1050 |
LSA1141 | ppdK | GGTTATCGATAAAA | -29 | ||
LSA1146 | manA | CGAAATCGCTTTAA | -98 | ||
LSA1188 | pox1 | TGTAATCGATTTCA | -88 | ||
LSA1204 | lsa1204 | TGTAATCGTTTTTT | -127 | ||
LSA1343 | eutD | GTAAAACGCTCTCA | -94 | ||
LSA1399 | loxL2 | TGTAAACGATTTCA | -42 | ||
LSA1457 | lsa1457 | TGATAACGCTTACA | -85 | ||
LSA1463d | ptsH | TGAAAGCGGTATAG | -161 | ptsHI | LSA1463-1462 |
LSA1641 | nanE | TGTAAGCGGTTAAT | -85 | nanE-nanA | LSA1641-1640 |
LSA1643 | lsa1643 | TGATAACGCTTACA | -31 | ||
LSA1651 | lsa1651 | GGTAAGCGGTTAAA | -148 | ||
LSA1711 | lacL | TGAAACCGTTTTAA | -36 | lacL-lacM | LSA1711-1710 |
LSA1792 | scrA | TGTAAACGGTTGTA | -78 | scrA-dexB-scrK | LSA1792-1790 |
LSA1830 | pox2 | TTGTAACGCTTACA | -70 |