From: Global transcriptome response in Lactobacillus sakei during growth on ribose
Gene locus | Gene | Description | 23K | MF1053 | LS 25 |
---|---|---|---|---|---|
Carbohydrate transport and metabolism | |||||
Transport/binding of carbohydrates | |||||
LSA0185* | galP | Galactose:cation symporter | 1.2 | Â | 1.7 |
LSA0200* | rbsU | Ribose transport protein | 2.8 | 3.5 | 4.3 |
LSA0353* | lsa0353 | Putative cellobiose-specific PTS, enzyme IIB | 3.6 | 1.3 | 2.5 |
LSA0449* | manL | Mannose-specific PTS, enzyme IIAB | 2.1 | 2.5 | 1.5 |
LSA0450* | manN | Mannose-specific PTS, enzyme IIC | 1.9 | 2.0 | 1.4 |
LSA0451* | manM | Mannose-specific PTS, enzyme IID | 2.4 | 1.0 | 2.1 |
LSA0651* | glpF | Glycerol uptake facilitator protein, MIP family | 3.4 | 4.7 | 3.4 |
LSA1050* | fruA | Fructose-specific PTS, enzyme IIABC | Â | Â | 0.9 |
LSA1204* | lsa1204 | Putative sugar transporter | Â | 1.1 | Â |
LSA1457* | lsa1457 | Putative cellobiose-specific PTS, enzyme IIC | Â | 2.3 | Â |
LSA1462* | ptsI | PTS, enzyme I | 0.8 | 1.7 | 0.9 |
LSA1463* | ptsH | Phosphocarrier protein HPr (histidine protein) | Â | 1.2 | 0.9 |
LSA1533 | lsa1533 | Putative cellobiose-specific PTS, enzyme IIA | Â | 2.5 | 2.1 |
LSA1690 | lsa1690 | Putative cellobiose-specific PTS, enzyme IIC | 0.9 | Â | Â |
LSA1792* | scrA | Sucrose-specific PTS, enzyme IIBCA | 0.8 | Â | 1.1 |
Metabolism of carbohydrates and related molecules | |||||
LSA0123* | lsa0123 | Putative sugar kinase, ROK family | 1.2 | Â | Â |
LSA0198 | ack1 | Acetate kinase (acetokinase) | 1.7 | Â | 1.3 |
LSA0254* | lsa0254 | Putative carbohydrate kinase | 2.4 | 0.8 | 1.8 |
LSA0292* | budC | Acetoin reductase (acetoin dehydrogenase) (meso-2,3-butanediol dehydrogenase) | 3.4 | 2.3 | 3.4 |
LSA0444 | lsa0444 | Putative malate dehydrogenase | 3.4 | D | 2.1 |
LSA0516 | hprK | Hpr kinase/phosphorylase | 2.0 | 1.6 | 1.2 |
LSA0664* | loxL1N | L-lactate oxidase (N-terminal fragment), degenerate | 1.2 | Â | 0.7 |
LSA0665* | loxLI | L-lactate oxidase (central fragment), degenerate | 1.0 | Â | Â |
LSA0666* | loxL1C | L-lactate oxidase (C-terminal fragment), degenerate | 1.0 | Â | Â |
LSA0974* | pflB | Formate C-acetyltransferase (pyruvate formate-lyase) (formate acetyltransferase) | 4.0 | Â | Â |
LSA0981 | aldB | Acetolactate decarboxylase (alpha-acetolactate decarboxylase) | Â | 0.6 | 1.9 |
LSA0982 | als | Acetolactate synthase (alpha-acetolactate synthase) | Â | Â | 1.9 |
LSA0983 | lsa0983 | Putative aldose-1 epimerase | 0.6 | Â | Â |
LSA1032 | pyk | Pyruvate kinase | Â | -0.7 | Â |
LSA1080 | lsa1080 | Myo-inositol monophosphatase | 0.6 | Â | 0.8 |
LSA1082 | pdhD | Pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase | 2.8 | 2.5 | 2.1 |
LSA1083 | pdhC | Puruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase | 3.4 | 3.7 | 2.7 |
LSA1084 | pdhB | Pyruvate dehydrogenase complex, E1 component, beta subunit | 3.2 | 3.3 | 2.2 |
LSA1085 | pdhA | Pyruvate dehydrogenase complex, E1 component, alpha subunit | 2.9 | 3.5 | 2.4 |
LSA1141* | ppdK | Pyruvate phosphate dikinase | 1.0 | Â | 0.9 |
LSA1188* | pox1 | Pyruvate oxidase | 2.3 | 3.1 | 2.1 |
LSA1298 | ack2 | Acetate kinase (acetokinase) | 1.1 | 0.9 | 0.9 |
LSA1343* | eutD | Phosphate acetyltransferase (phosphotransacetylase) | 2.0 | 1.0 | 1.6 |
LSA1381 | lsa1381 | Putative acylphosphatase | -0.6 | -0.5 | Â |
LSA1399* | loxL2 | L-lactate oxidase | 3.4 | U | Â |
LSA1630 | lsa1630 | Putative sugar kinase, ROK family | -0.6 | Â | -0.6 |
LSA1640* | nanA | N-acetylneuraminate lyase | 2.0 | Â | D |
LSA1641* | nanE | N-acylglucosamine/mannosamine-6-phosphate 2-epimerase | 0.9 | Â | D |
LSA1643* | lsa1643 | Putative sugar kinase, ROK family | 1.8 | Â | Â |
LSA1668 | ack3 | Acetate kinase (acetokinase) | -0.7 | Â | -1.1 |
LSA1830* | pox2 | Pyruvate oxidase | 0.7 | Â | Â |
Intermediary metabolism | |||||
LSA0255* | lsa0255 | Putative phosphoribosyl isomerase | 2.0 | 1.0 | 1.6 |
Specific carbohydrate metabolic pathway | |||||
LSA0201* | rbsD | D-ribose pyranase | 2.5 | 2.5 | 3.4 |
LSA0202* | rbsK | Ribokinase | 3.0 | 3.9 | 4.3 |
LSA0289* | xpk | Xylulose-5-phosphate phosphoketolase | 3.2 | 2.3 | 2.6 |
LSA0297 | gntZ | 6-phosphogluconate dehydrogenase | -1.2 | -0.9 | -1.7 |
LSA0298 | gntK | Gluconokinase | -0.8 | Â | Â |
LSA0381 | zwf | Glucose-6-phosphate 1-dehydrogenase | -0.6 | -0.6 | -0.6 |
LSA0649* | glpK | Glycerol kinase | 3.4 | 4.8 | 2.1 |
LSA0650* | glpD | Glycerol-3-phosphate dehydrogenase | 2.3 | 2.2 | 2.0 |
LSA0764* | galK | Galactokinase | 1.1 | 0.7 | 1.8 |
LSA0765* | galE1 | UDP-glucose 4-epimerase | Â | Â | 1.2 |
LSA0766* | galT | Galactose-1-phosphate uridylyltransferase | 1.2 | 0.8 | 2.0 |
LSA0767* | galM | Aldose 1-epimerase (mutarotase) | 1.3 | Â | 2.0 |
LSA1146* | manA | Mannose-6-phosphate isomerase | 1.4 | 1.3 | 1.5 |
LSA1531 | lsa1531 | Putative beta-glucosidase | Â | 0.7 | 0.9 |
LSA1588 | nagA | N-acetylglucosamine-6-phosphate deacetylase | 0.6 | Â | Â |
LSA1685 | rpiA | Ribose 5-phosphate epimerase (ribose 5-phosphate isomerase) | Â | 1.1 | 0.8 |
LSA1710* | lacM | Beta-galactosidase, small subunit (lactase, small subunit) | 3.3 | Â | 1.2 |
LSA1711* | lacL | Beta-galactosidase, large subunit (lactase, large subunit) | 3.0 | 1.5 | 1.7 |
LSA1790* | scrK | Fructokinase | Â | 1.0 | 1.1 |
LSA1791* | dexB | Glucan 1,6-alpha-glucosidase (dextran glucosidase) | Â | Â | 1.1 |
LSA1795 | melA | Alpha-galactosidase (melibiase) | Â | Â | -0.6 |
Glycolytic pathway | |||||
LSA0131 | gpm2 | Phosphoglycerate mutase | Â | 0.7 | Â |
LSA0206 | gpm3 | Phosphoglycerate mutase | -0.7 | -0.8 | -0.9 |
LSA0609* | gloAC | Lactoylglutathione lyase (C-terminal fragment), authentic frameshift | 1.1 | Â | 0.7 |
LSA0803 | gpm4 | Phosphoglycerate mutase | 0.5 | Â | 0.5 |
LSA1033 | pfk | 6-phosphofructokinase | -0.6 | -1.1 | -0.5 |
LSA1157 | mgsA | Methylglyoxal synthase | 2.3 | 1.4 | 1.7 |
LSA1179 | pgi | Glucose-6-phosphate isomerase | 0.5 | Â | Â |
LSA1527 | fba | Fructose-bisphosphate aldolase | -1.0 | -0.7 | -1.1 |
LSA1606 | ldhL | L-lactate dehydrogenase | -1.0 | -0.9 | -1.5 |
Nucleotide transport and metabolism | |||||
Transport/binding of nucleosides, nucleotides, purines and pyrimidines | |||||
LSA0013 | lsa0013 | Putative nucleobase:cation symporter | -0.9 | Â | -1.5 |
LSA0055 | lsa0055 | Putative thiamine/thiamine precursor:cation symporter | Â | Â | 1.6 |
LSA0064 | lsa0064 | Putative nucleobase:cation symporter | Â | -0.8 | Â |
LSA0259 | lsa0259 | Pyrimidine-specific nucleoside symporter | 1.5 | Â | 1.3 |
LSA0798* | lsa0798 | Pyrimidine-specific nucleoside symporter | 3.5 | 2.2 | 1.7 |
LSA0799* | lsa0799 | Putative purine transport protein | 4.4 | 2.7 | 2.9 |
LSA1210 | lsa1210 | Putative cytosine:cation symporter (C-terminal fragment), authentic frameshift | -0.8 | Â | -0.6 |
LSA1211 | lsa1211 | Putative cytosine:cation symporter (N-terminal fragment), authentic frameshit | -1.1 | Â | -0.9 |
Metabolism of nucleotides and nucleic acids | |||||
LSA0010 | lsa0010 | Putative nucleotide-binding phosphoesterase | Â | Â | -0.6 |
LSA0023 | lsa0023 | Putative ribonucleotide reductase (NrdI-like) | -0.5 | D | D |
LSA0063 | purA | Adenylosuccinate synthetase (IMP-aspartate ligase) | Â | -0.8 | Â |
LSA0139 | guaA | Guanosine monophosphate synthase (glutamine amidotransferase) | Â | -0.5 | -0.8 |
LSA0252 | iunH1 | Inosine-uridine preferring nucleoside hydrolase | 2.6 | 2.6 | 1.8 |
LSA0446 | pyrDB | Putative dihydroorotate oxidase, catalytic subunit | Â | Â | 0.9 |
LSA0489 | lsa0489 | Putative metal-dependent phosphohydrolase precursor | 0.5 | Â | Â |
LSA0533* | iunH2 | Inosine-uridine preferring nucleoside hydrolase | 1.2 | Â | Â |
LSA0785 | lsa0785 | Putative NCAIR mutase, PurE-related protein | -2.3 | Â | -1.3 |
LSA0795* | deoC | 2 Deoxyribose-5 phosphate aldolase | 4.0 | 2.1 | 2.2 |
LSA0796* | deoB | Phosphopentomutase (phosphodeoxyribomutase) | 5.5 | 4.1 | 3.2 |
LSA0797* | deoD | Purine-nucleoside phosphorylase | 4.5 | 2.6 | 1.9 |
LSA0801* | pdp | Pyrimidine-nucleoside phosphorylase | 1.8 | Â | Â |
LSA0940 | nrdF | Ribonucleoside-diphosphate reductase, beta chain | Â | 1.0 | 0.6 |
LSA0941 | nrdE | Ribonucleoside-diphosphate reductase, alpha chain | Â | 1.0 | 0.6 |
LSA0942 | nrdH | Ribonucleotide reductase, NrdH-redoxin | Â | 1.1 | Â |
LSA0950 | pyrR | Bifunctional protein: uracil phosphoribosyltransferase and pyrimidine operon transcriptional regulator | -0.6 | Â | Â |
LSA0993 | rnhB | Ribonuclease HII (RNase HII) | Â | Â | 0.6 |
LSA1018 | cmk | Cytidylate kinase | Â | Â | 0.6 |
LSA1097 | lsa1097 | Putative ADP-ribose phosphorylase, NUDIX family | 0.5 | Â | Â |
LSA1352 | lsa1352 | Putative phosphomethylpyrimidine kinase | -0.8 | Â | Â |
LSA1651 | lsa1651 | Putative purine phosphoribosyltransferase, PRT family | Â | 0.8 | Â |
LSA1661 | lsa1661 | Putative nucleotide hydrolase, NUDIX family | Â | -0.5 | Â |
LSA1805 | dgk | Deoxyguanosine kinase | -1.0 | Â | -0.8 |
Transcription | |||||
Transcription regulation | |||||
LSA0130 | lsa0130 | Putative transcriptional regulator, LacI family | -0.6 | Â | Â |
LSA0132 | lsa0132 | Putative transcriptional regulator, MarR family | -0.6 | Â | Â |
LSA0161 | lsa0161 | Putative transcriptional regulator, ArsR family | -0.6 | Â | Â |
LSA0186 | lsa0186 | Putative transcriptional regulator, LytR family | Â | 0.8 | 0.6 |
LSA0203 | rbsR | Ribose operon transcriptional regulator, LacI family | 1.7 | Â | Â |
LSA0217 | lsa0217 | Putative thiosulfate sulfurtransferase with a ArsR-HTH domain, rhodanese family | Â | -1.0 | -0.7 |
LSA0229 | lsa0229 | Putative transcriptional regulator, MerR family (N-terminal fragment), authentic frameshift | -0.5 | Â | Â |
LSA0269 | lsa0269 | Putative transcriptional regulator, TetR family | Â | Â | -0.6 |
LSA0293 | lsa0293 | Putative DNA-binding protein, XRE family | Â | Â | -0.6 |
LSA0356 | rex1 | Redox-sensing transcriptional repressor, Rex | -0.8 | -0.5 | -0.9 |
LSA0603 | cggR | Glycolytic genes regulator | Â | -0.6 | -0.6 |
LSA0669 | lsa0669 | Putative transcription regulator, TetR family | Â | -0.6 | Â |
LSA0783 | lsa0783 | Putative transcriptional regulator, Fnr/Crp Family | -0.6 | Â | Â |
LSA0800 | deoR | Deoxyribonucleoside synthesis operon transcriptional regulator, GntR family | 3.8 | 2.1 | 1.9 |
LSA0835 | lsa0835 | Putative DNA-binding protein, XRE family | -0.6 | Â | Â |
LSA0848 | rex | Redox-sensing transcriptional repressor, Rex | 1.6 | 0.7 | Â |
LSA0972 | lsa0972 | Putative transcriptional regulator, LysR family | 0.9 | Â | Â |
LSA1201 | lsa1201 | Putative transcriptional regulator, GntR family | 1.4 | D | D |
LSA1322 | glnR | Glutamine synthetase transcriptional regulator, MerR family | -1.4 | -1.3 | Â |
LSA1351 | lsa1351 | Putative transcritional regulator with aminotransferase domain, GntR family | Â | -0.5 | -0.6 |
LSA1434 | lsa1434 | Putative transcriptional regulator, DUF24 family (related to MarR/PadR families) | -0.8 | Â | Â |
LSA1449 | spxA | Transcriptional regulator Spx | 1.0 | Â | 0.6 |
LSA1521 | lsa1521 | Putative transcriptional regulator, TetR family | 0.6 | Â | Â |
LSA1554 | lsa1554 | Putative transcriptional regulator, LacI family | -0.7 | -0.9 | -0.5 |
LSA1587 | lsa1587 | Putative transcriptional regulator, GntR family | 0.6 | Â | Â |
LSA1611 | lsa1611 | Putative DNA-binding protein, PemK family | Â | -0.5 | -0.7 |
LSA1653 | lsa1653 | Putative transcriptional regulator, MarR family | Â | Â | -0.6 |
LSA1692 | lsa1692 | Putative transcriptional regulator, GntR family | 0.7 | Â | 0.7 |
CoEnzyme transport and metabolism | |||||
Metabolism of coenzymes and prostethic groups | |||||
LSA0041 | panE | 2-dehydropantoate 2-reductase | Â | 0.8 | Â |
LSA0057 | thiE | Thiamine-phosphate pyrophosphorylase (thiamine-phosphate synthase) | Â | Â | 1.9 |
LSA0058 | thiD | Phosphomethylpyrimidine kinase (HMP-phosphate kinase) | Â | Â | 1.4 |
LSA0059 | thiM | Hydroxyethylthiazole kinase (4-methyl-5-beta-hydroxyethylthiazole kinase) | 1.0 | Â | 1.8 |
LSA0183 | lsa0183 | Putative hydrolase, isochorismatase/nicotamidase family | -0.7 | Â | Â |
LSA0840 | lsa0840 | Putative glutamate-cysteine ligase | 0.6 | Â | Â |
LSA0947 | fhs | Formate-tetrahydrofolate ligase (formyltetrahydrofolate synthetase) | 0.6 | Â | Â |
LSA0980 | lsa0980 | Putative hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, PfkB family | 0.6 | Â | Â |
LSA1101 | folK | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | 0.6 | U | Â |
LSA1614 | acpS | Holo-[acyl-carrier protein] synthase (holo-ACP synthase) (4'-phosphopantetheine transferase AcpS) | -1.0 | -0.9 | -0.9 |
LSA1664 | lsa1664 | Putative dihydrofolate reductase | 1.6 | 1.1 | 1.5 |
Energy production and conversion | |||||
Membrane bioenergetics (ATP synthase) | |||||
LSA1125 | atpC | H(+)-transporting two-sector ATPase (ATP synthase), epsilon subunit | 0.6 | Â | Â |
LSA1126 | atpD | H(+)-transporting two-sector ATPase (ATP synthase), beta subunit | Â | Â | 0.6 |
LSA1127 | atpG | H(+)-transporting two-sector ATPase (ATP synthase), gamma subunit | Â | Â | 0.8 |
LSA1128 | atpA | H(+)-transporting two-sector ATPase (ATP synthase), alpha subunit | Â | Â | 0.6 |
LSA1129 | atpH | H(+)-transporting two-sector ATPase (ATP synthase), delta subunit | Â | Â | 0.6 |
LSA1130 | atpF | H(+)-transporting two-sector ATPase (ATP synthase), B subunit | Â | Â | 0.5 |
LSA1131 | atpE | H(+)-transporting two-sector ATPase (ATP synthase), C subunit | Â | Â | 0.7 |
Inorganic ion transport and metabolism | |||||
Transport/binding of inorganic ions | |||||
LSA0029 | lsa0029 | Putative ion Mg(2+)/Co(2+) transport protein, hemolysinC-family | Â | Â | -0.7 |
LSA0134 | lsa0134 | Putative Na(+)/H(+) antiporter | Â | Â | -0.6 |
LSA0180 | mtsC | Manganese ABC transporter, ATP-binding subunit | -0.8 | Â | Â |
LSA0181 | mtsB | Manganese ABC transporter, membrane-spanning subunit | -0.8 | Â | -1.0 |
LSA0182 | mtsA | Manganese ABC transporter, substrate-binding lipoprotein precursor | -0.7 | Â | -0.6 |
LSA0246 | mntH1 | Mn(2+)/Fe(2+) transport protein | -0.9 | Â | -1.3 |
LSA0283 | lsa0283 | Putative zinc/iron ABC transporter, ATP-binding subunit | Â | Â | -0.5 |
LSA0284 | lsa0284 | Putative zinc/iron ABC transporter, membrane-spanning subunit | Â | Â | -0.6 |
LSA0399 | lsa0399 | Iron(III)-compound ABC transporter, substrate-binding lipoprotein precursor | 1.1 | 0.9 | Â |
LSA0400 | lsa0400 | Iron(III)-compound ABC transporter, ATP-binding subunit | Â | 0.7 | Â |
LSA0401 | lsa0401 | Iron(III)-compound ABC transporter, membrane-spanning subunit | Â | Â | 0.5 |
LSA0402 | lsa0402 | Iron(III)-compound ABC transporter, membrane-spanning subunit | 0.5 | Â | 0.6 |
LSA0503 | pstC | Phosphate ABC transporter, membrane-spanning subunit | 0.5 | Â | Â |
LSA0504 | pstA | Phosphate ABC transporter, membrane-spanning subunit | 0.6 | Â | Â |
LSA0781 | lsa0781 | Putative cobalt ABC transporter, membrane-spanning/permease subunit | -0.9 | Â | Â |
LSA0782 | lsa0782 | Putative cobalt ABC transporter, membrane-spanning/permease subunit | -2.1 | Â | Â |
LSA1166 | lsa1166 | Putative potassium transport protein | 0.7 | Â | Â |
LSA1440 | cutC | Copper homeostasis protein, CutC family | -0.6 | Â | Â |
LSA1460 | atkB | Copper-transporting P-type ATPase | 0.6 | Â | Â |
LSA1638 | lsa1638 | Putative large conductance mechanosensitive channel | Â | -1.0 | -0.8 |
LSA1645 | lsa1645 | Putative Na(+)/(+) antiporter | 1.4 | Â | D |
LSA1699 | mntH2 | Mn(2+)/Fe(2+) transport protein | Â | Â | -0.6 |
LSA1703 | lsa1703 | Putative Na(+)/H(+) antiporter | -1.2 | Â | Â |
LSA1704 | lsa1704 | Putative calcium-transporting P-type ATPase | Â | Â | -0.8 |
LSA1735 | lsa1735 | Putative cobalt ABC transporter, membrane-spanning subunit | Â | Â | -0.6 |
LSA1736 | lsa1736 | Putative cobalt ABC transporter, ATP-binding subunit | -0.6 | Â | Â |
LSA1737 | lsa1737 | Putative cobalt ABC transporter, ATP-binding subunit | -0.7 | Â | Â |
LSA1838 | lsa1838 | Putative metal ion ABC transporter, membrane-spanning subunit | Â | Â | -0.5 |
LSA1839 | lsa1839 | Putative metal ion ABC transporter, substrate-binding lipoprotein precursor | Â | Â | -0.6 |
Amino acid transport and metabolism | |||||
Transport/binding of amino acids | |||||
LSA0125 | lsa0125 | Putative amino acid/polyamine transport protein | 0.6 | Â | Â |
LSA0189 | lsa0189 | Putative amino acid/polyamine transport protein | Â | Â | -0.7 |
LSA0311 | lsa0311 | Putative glutamate/aspartate:cation symporter | -1.1 | Â | -1.0 |
LSA1037 | lsa1037 | Putative amino acid/polyamine transport protein | 1.0 | 0.8 | 0.5 |
LSA1219 | lsa1219 | Putative cationic amino acid transport protein | 0.7 | Â | Â |
LSA1415 | lsa1415 | Putative amino acid/polyamine transport protein | 1.1 | Â | 0.7 |
LSA1424 | lsa1424 | Putative L-aspartate transport protein | -1.4 | -0.9 | -1.2 |
LSA1435 | lsa1435 | Putative amino acid:H(+) symporter | 1.0 | Â | 0.8 |
LSA1496 | lsa1496 | Putative glutamine/glutamate ABC transporter, ATP-binding subunit | Â | 1.2 | Â |
LSA1497 | lsa1497 | Putative glutamine/glutamate ABC transporter, membrane-spanning/substrate-binding subunit precursor | Â | 0.7 | Â |
Transport/binding of proteins/peptides | |||||
LSA0702 | oppA | Oligopeptide ABC transporter, substrate-binding lipoprotein precursor | Â | 1.3 | 1.0 |
LSA0703 | oppB | Oligopeptide ABC transporter, membrane-spanning subunit | Â | 0.8 | 0.8 |
LSA0704 | oppC | Oligopeptide ABC transporter, membrane-spanning subunit | Â | 1.8 | 1.0 |
LSA0705 | oppD | Oligopeptide ABC transporter, ATP-binding subunit | Â | 1.2 | 1.1 |
LSA0706 | oppF | Oligopeptide ABC transporter, ATP-binding subunit | Â | 1.2 | 1.2 |
Protein fate | |||||
LSA0053 | pepO | Endopeptidase O | 0.6 | Â | Â |
LSA0133 | pepR | Prolyl aminopeptidase | 1.5 | Â | Â |
LSA0226 | pepN | Aminopeptidase N (lysyl-aminopeptidase-alanyl aminopeptidase) | Â | Â | -0.7 |
LSA0285 | pepF1 | Oligoendopeptidase F1 | Â | Â | -0.7 |
LSA0320 | pepD3 | Dipeptidase D-type (U34 family) | Â | -0.8 | -0.5 |
LSA0424 | pepV | Xaa-His dipeptidase V (carnosinase) | 1.6 | Â | Â |
LSA0643 | pepX | X-Prolyl dipeptidyl-aminopeptidase | 0.6 | Â | Â |
LSA0888 | pepT | Tripeptide aminopeptidase T | 0.6 | Â | Â |
LSA1522 | pepS | Aminopeptidase S | 0.5 | Â | Â |
LSA1686 | pepC1N | Cysteine aminopeptidase C1 (bleomycin hydrolase) (N-terminal fragment), authentic frameshift | Â | 1.6 | Â |
LSA1688 | pepC2 | Cysteine aminopeptidase C2 (bleomycin hydrolase) | Â | 0.7 | Â |
LSA1689 | lsa1689 | Putative peptidase M20 family | 1.0 | Â | 1.1 |
Metabolism of amino acids and related molecules | |||||
LSA0220_c | dapE | Succinyl-diaminopimelate desuccinylase | -1.4 | Â | -1.5 |
LSA0316 | sdhB | L-serine dehydratase, beta subunit (L-serine deaminase) | -0.7 | Â | Â |
LSA0370* | arcA | Arginine deiminase (arginine dihydrolase) | 1.9 | Â | Â |
LSA0372* | arcC | Carbamate kinase | 0.5 | Â | Â |
LSA0463 | lsa0463 | Putative 2-hydroxyacid dehydrogenase | -0.7 | Â | Â |
LSA0509 | kbl | 2-amino-3-ketobutyrate coenzyme A ligase (glycine acetyltransferase) | 1.5 | Â | Â |
LSA0510 | lsa0510 | L-threonine dehydrogenase (N-terminal fragment), authentic frameshift | 2.0 | 0.5 | Â |
LSA0572* | tdcB | Threonine deaminase (threonine ammonia-lyase, threonine dehydratase, IlvA homolog) | 2.2 | Â | 1.7 |
LSA0922 | serA | D-3-phosphoglycerate dehydrogenase | 0.9 | Â | Â |
LSA1134 | glyA | Glycine/Serine hydroxymethyltransferase | Â | 0.7 | Â |
LSA1321 | glnA | Glutamate-ammonia ligase (glutamine synthetase) | -1.3 | -1.0 | Â |
LSA1484 | mvaS | Hydroxymethylglutaryl-CoA synthase | -0.7 | -0.6 | -0.7 |
LSA1693 | asnA2 | L-asparaginase | 0.8 | Â | Â |
Lipid transport and metabolism | |||||
Metabolism of lipids | |||||
LSA0045 | cfa | Cyclopropane-fatty-acyl-phospholipid synthase | -1.3 | -1.4 | -1.4 |
LSA0644 | lsa0644 | Putative acyl-CoA thioester hydrolase | 0.6 | Â | Â |
LSA0812 | fabZ1 | (3R)-hydroxymyristoyl-[acyl-carrier protein] dehydratase | Â | -0.7 | 0.5 |
LSA0813 | fabH | 3-oxoacyl-[acyl carrier protein] synthetase III | Â | Â | 0.6 |
LSA0814 | acpP | Acyl carrier protein | Â | Â | 0.6 |
LSA0815 | fabD | Malonyl-CoA:ACP transacylase | Â | -0.7 | 0.7 |
LSA0816 | fabG | 3-oxoacyl-acyl carrier protein reductase | Â | -0.7 | Â |
LSA0817 | fabF | 3-oxoacyl-[acyl carrier protein] synthetase II | Â | -0.7 | Â |
LSA0819 | fabZ | (3R)-hydroxymyristoyl-[acyl carrier proetin] dehydratase | Â | Â | 0.7 |
LSA0820 | accC | Acetyl-CoA carboxylase (biotin carbooxylase subunit) | Â | -0.7 | Â |
LSA0821 | accD | Acetyl-CoA carboxylase (carboxyl transferase beta subunit) | Â | Â | 0.8 |
LSA0822 | accA | Acetyl-CoA carboxylase (carboxyl transferase alpha subunit) | Â | Â | 0.6 |
LSA0823 | fabI | Enoyl [acyl carrier protein] reductase | Â | Â | 0.9 |
LSA0891 | lsa0891 | Putative lipase/esterase | 1.2 | Â | Â |
LSA1485 | mvaA | Hydroxymethylglutaryl-CoA reductase | -0.5 | Â | Â |
LSA1493 | lsa1493 | Putative diacylglycerol kinase | -0.6 | -0.9 | -0.7 |
LSA1652 | ipk | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | -0.6 | Â | -0.7 |
Secondary metabolites transport and metabolism | |||||
Transport/binding proteins and lipoproteins | |||||
LSA0046 | lsa0046 | Putative transport protein | -1.0 | -0.6 | -1.3 |
LSA0089 | lsa0089 | Putative drug transport protein | -2.1 | -0.9 | -0.8 |
LSA0094 | lsa0094 | Putative transport protein, Major Facilitator Super (MFS) family transporter | -0.7 | Â | -0.7 |
LSA0095 | lsa0095 | Putative transport protein | 1.3 | 0.5 | Â |
LSA0128 | lsa0128 | Putative antimicrobial peptide ABC exporter, membrane-spanning/permease subunit | Â | Â | -0.5 |
LSA0187 | lsa0187 | Putative drug-resistance ABC transporter, two ATP-binding subunits | Â | 0.7 | Â |
LSA0219_b | lsa0219_b | Putative cyanate transport protein | -0.6 | Â | Â |
LSA0232 | lmrA | Multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits | -0.7 | Â | -0.7 |
LSA0270 | lsa0270 | Putative multidrug ABC exporter, membrane-spanning/permease subunit | -0.7 | Â | Â |
LSA0271 | lsa0271 | Putative multidrug ABC exporter, ATP-binding subunit | -0.7 | Â | -0.6 |
LSA0272 | lsa0272 | Putative multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits | -0.6 | Â | -0.6 |
LSA0308 | lsa0308 | Putative drug:H(+) antiporter | Â | Â | -0.7 |
LSA0376 | lsa0376 | Putative transport protein | 0.7 | Â | Â |
LSA0420 | lsa0420 | Putative drug:H(+) antiporter (N-terminal fragment), authentic frameshift | -0.8 | Â | -1.1 |
LSA0469 | lsa0469 | Putative drug:H(+) antiporter | -0.6 | Â | -0.5 |
LSA0788 | lsa0788 | Putative facilitator protein, MIP family | -2.6 | Â | Â |
LSA0936 | lsa0936 | Putative drug ABC exporter, membrane-spanning/permease subunit | 1.1 | Â | Â |
LSA0937 | lsa0937 | Putative drug ABC exporter, membrane-spanning/permease subunit | 1.3 | Â | Â |
LSA0938 | lsa0938 | Putative drug ABC exporter, ATP-binding subunit | 1.2 | Â | Â |
LSA0963 | lsa0963 | Integral membrane protein, hemolysin III related | Â | Â | Â |
LSA1088 | lsa1088 | Putative multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits | 0.5 | Â | Â |
LSA1261 | lsa1261 | Putative autotransport protein | 0.5 | Â | Â |
LSA1340 | lsa1340 | Putative transport protein | Â | -0.7 | Â |
LSA1366 | lsa1366 | Putative ABC exporter, ATP-binding subunit | -0.8 | Â | -1.0 |
LSA1367 | lsa1367 | Putative ABC exporter, membrane-spanning/permease subunit | -0.8 | -0.5 | -0.8 |
LSA1420 | lsa1417 | Putative lipase/esterase | Â | -1.1 | Â |
LSA1621 | lsa1621 | Putative drug:H(+) antiporter | Â | -1.1 | Â |
LSA1642 | lsa1642 | Putative Solute:Na(+) symporter | 3.4 | 1.8 | D |
LSA1872 | lsa1872 | Putative drug:H(+) antiporter | Â | 0.7 | Â |
LSA1878 | lsa1878 | Putative drug resistance ABC transporter, two ATP-binding subunits | -0.6 | Â | Â |
Detoxification | |||||
LSA0772 | lsa0772 | Hypothetical protein (TelA, telluric resistance family) | 1.0 | Â | 0.7 |
LSA1317 | lsa1317 | Putative chromate reductase | 0.6 | -0.7 | Â |
LSA1450 | lsa1450 | Putative metal-dependent hydrolase (beta-lactamase family III) | Â | Â | 0.6 |
LSA1776 | lsa1776 | Putative 4-carboxymuconolactone decarboxylase | 0.6 | Â | D |
Translation, ribosomal structure and biogenesis | |||||
Translation initiation | |||||
LSA1135 | lsa1135 | Putative translation factor, Sua5 family | Â | 0.7 | 0.6 |
Translation elongation | |||||
LSA0251 | efp1 | Elongation factor P (EF-P) | 0.5 | Â | Â |
LSA1063 | tuf | Elongation factor Tu (EF-Tu) | 0.6 | Â | Â |
Ribosomal proteins | |||||
LSA0011 | rplI | 50S Ribosomal protein L9 | Â | Â | -0.8 |
LSA0266 | rpsN | 30S ribosomal protein S14 | Â | 0.7 | -0.5 |
LSA0494 | lsa0494 | 30S ribosomal interface protein S30EA | 1.7 | Â | Â |
LSA0696 | rpmB | 50S ribosomal protein L28 | Â | Â | 0.8 |
LSA1017 | rpsA | 30S Ribosomal protein S1 | 0.9 | Â | 0.6 |
LSA1333 | rpmG | 50S ribosomal protein L33 | Â | Â | 0.6 |
LSA1666 | rplL | 50S ribosomal protein L7/L12 | -0.6 | Â | Â |
LSA1676 | rpmG2 | 50S ribosomal protein L33 | Â | Â | -0.6 |
LSA1750 | rplF | 50S ribosomal protein L6 | Â | 0.6 | Â |
LSA1755 | rpsQ | 30S ribosomal protein S17 | Â | 0.5 | Â |
LSA1761 | rplB | 50S ribosomal protein L2 | Â | 0.6 | Â |
LSA1765 | rpsJ | 30S ribosomal protein S10 | -0.7 | Â | Â |
Protein synthesis | |||||
LSA0377 | tgt | Queuine tRNA-ribosyltransferase | -0.6 | Â | Â |
LSA1546 | gatB | Glutamyl-tRNA amidotransferase, subunit B | Â | -0.5 | Â |
LSA1547 | gatA | Glutamyl-tRNA amidotransferase, subunit A | -0.5 | Â | -0.5 |
RNA restriction and modification | |||||
LSA0437 | lsa0437 | Hypothetical protein with an RNA-binding domain | -0.7 | Â | Â |
LSA0443 | lsa0443 | Putative single-stranded mRNA endoribonuclease | 2.7 | Â | 1.9 |
LSA0738 | dtd | D-tyrosyl-tRNA(tyr) deacylase | 0.5 | Â | Â |
LSA0794 | trmU | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | Â | -0.9 | Â |
LSA1534 | lsa1534 | Putative ATP-dependent RNA helicase | Â | 0.9 | Â |
LSA1615 | lsa1615 | Putative ATP-dependent RNA helicase | -0.7 | -0.8 | -1.0 |
LSA1723 | truA | tRNA pseudouridylate synthase A (pseudouridylate synthase I) | -0.7 | Â | -0.6 |
LSA1880 | trmE | tRNA modification GTPase trmE | -0.7 | Â | Â |
Aminoacyl-tRNA synthetases | |||||
LSA0880 | glyQ | Glycyl-tRNA synthetase, alpha subunit | Â | 0.7 | Â |
LSA0881 | glyS | Glycyl-tRNA synthetase, beta subunit | Â | 0.7 | Â |
LSA1400 | thrS | Threonyl-tRNA synthetase | 0.6 | Â | Â |
LSA1681 | cysS | Cysteinyl-tRNA synthetase | -0.6 | Â | Â |
DNA replication, recombination and repair | |||||
DNA replication | |||||
LSA0221 | lsa0221 | Putative transcriptional regulator, LysR family (C-terminal fragment), degenerate | -0.8 | -0.9 | -1.1 |
LSA0976 | parE | Topoisomerase IV, subunit B | Â | 0.5 | Â |
Transposon and IS | |||||
LSA1152_a | tnpA3-ISLsa1 | Transposase of ISLsa1 (IS30 family) | -0.6 | Â | Â |
Phage-related function | |||||
LSA1292 | lsa1292 | Putative prophage protein | 0.6 | Â | Â |
LSA1788 | lsa1788 | Putative phage-related 1,4-beta-N-acetyl muramidase (cell wall hydrolase) | -1.0 | D | D |
DNA recombination and repair | |||||
LSA0076 | lsa0076 | Putative DNA invertase (plasmidic resolvase) | -1.1 | -1.5 | -1.4 |
LSA0366 | ruvA | Holliday junction DNA helicase RuvA | Â | Â | -0.5 |
LSA0382 | dinP | DNA-damage-inducible protein P | -0.5 | Â | Â |
LSA0487 | recA | DNA recombinase A | -0.8 | Â | -1.1 |
LSA0523 | uvrB | Excinuclease ABC, subunit B | -0.7 | Â | -0.5 |
LSA0524 | uvrA1 | Excinuclease ABC, subunit A | -1.2 | Â | -0.7 |
LSA0910 | rexAN | ATP-dependent exonuclease, subunit A (N-terminal fragment), authentic frameshift | 0.6 | Â | Â |
LSA0911 | rexAC | ATP-dependent exonuclease, subunit A (C-terminal fragment), authentic frameshift | 0.7 | Â | Â |
LSA0912 | lsa0912 | Putative ATP-dependent helicase, DinG family | 0.6 | Â | 0.8 |
LSA1162 | lsa1162 | DNA-repair protein (SOS response UmuC-like protein) | Â | 0.8 | -0.6 |
LSA1405 | fpg | Formamidopyrimidine-DNA glycosylase | -0.5 | -0.6 | -0.6 |
LSA1477 | recX | Putative regulatory protein, RecX family | -0.6 | Â | Â |
LSA1843 | ogt | Methylated-DNA-protein-cysteine S-methyltransferase | -0.6 | Â | Â |
DNA restriction and modification | |||||
LSA0143 | lsa0143 | Putative adenine-specific DNA methyltransferase | -0.7 | D | D |
LSA0921 | lsa0921 | Putative adenine-specific DNA methyltransferase | 0.8 | Â | Â |
LSA1299 | lsa1299 | Putative adenine-specific DNA methyltransferase | 0.9 | 0.7 | 1.2 |
Information pathways | |||||
LSA0326 | lsa0326 | Putative DNA helicase | Â | -0.6 | U |
DNA packaging and segregation | |||||
LSA0135 | lsa0135 | Hypothetical integral membrane protein, similar to CcrB | Â | Â | -0.6 |
LSA1015 | hbsU | Histone-like DNA-binding protein HU | 1.0 | Â | 0.9 |
Cell division and chromosome partitioning | |||||
Cell division | |||||
LSA0755 | divIVA | Cell-division initiation protein (septum placement) | Â | Â | 0.5 |
LSA0845 | lsa0845 | Putative negative regulator of septum ring formation | 0.7 | Â | 0.6 |
LSA1118 | lsa1118 | Rod-shape determining protein | Â | 0.6 | 0.5 |
LSA1597 | ftsH | ATP-dependent zinc metalloendopeptidase FtsH (cell division protein FtsH) | Â | Â | -0.6 |
LSA1879 | gidA | Cell division protein GidA | -0.6 | Â | Â |
Cell envelope biogenesis, outer membrane | |||||
Cell wall | |||||
LSA0280 | murE | UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase | -0.6 | -0.6 | -0.7 |
LSA0621 | pbp2A | Bifunctional glycolsyltransferase/transpeptidase penicillin binding protein 2A | Â | Â | 0.7 |
LSA0648 | lsa0648 | Putative penicillin-binding protein precursor (beta-lactamase class C) | Â | Â | 1.0 |
LSA0862 | lsa0862 | N-acetylmuramoyl-L-alanine amidase precursor (cell wall hydrolase) (autolysin) | 0.6 | Â | 0.8 |
LSA0917 | pbp1A | Bifunctional glycosyltransferase/transpeptidase penicillin-binding protein 1A | Â | Â | 0.5 |
LSA1123 | murA1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase I | Â | -0.5 | Â |
LSA1334 | pbp2B2 | Bifuntional dimerisation/transpeptidase penicillin-binding protein 2B | Â | 0.7 | 0.7 |
LSA1437 | lsa1437 | N-acetylmuramoyl-L-alanine amidase precursor (cell wall hydrolase) (autolysin) | Â | -0.7 | Â |
LSA1441 | bacA | Putative undecaprenol kinase (bacitracine resistance protein A) | Â | 0.6 | Â |
LSA1613 | alr | Alanine racemase | -0.8 | -0.9 | -0.7 |
LSA1616 | murF | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Â | Â | -0.5 |
Cell envelope and cellular processes | Â | Â | |||
LSA0162 | lsa0162 | Putative Bifunctional glycosyl transferase, family 8 | Â | -1.2 | -1.5 |
LSA1246 | lsa1246 | Putative glycosyl transferase, family 2 | Â | -0.9 | Â |
LSA1558 | lsa1558 | Putative extracellular N-acetylmuramoyl-L-alanine amidase precursor (cell wall hydrolase/Lysosyme subfamily 2) | Â | Â | -0.6 |
Cell motility and secretion | |||||
Protein secretion | |||||
LSA0948 | lspA | Signal peptidase II (lipoprotein signal peptidase) (prolipoprotein signal peptidase) | Â | Â | 0.5 |
LSA1884 | oxaA2 | Membrane protein chaperone oxaA | Â | Â | -0.6 |
Signal transduction | |||||
Signal transduction | |||||
LSA0561 | sppKN | Two-component system, sensor histidine kinase, (SppK fragment), degenerate | Â | 0.5 | Â |
LSA0692 | lsa0692 | Putative serine/threonine protein kinase | Â | 0.5 | 0.6 |
LSA1384 | lsa1384 | Two-component system, response regulator | Â | 0.5 | Â |
Post translational modifications, protein turnover, chaperones | |||||
Protein folding | |||||
LSA0050 | lsa0050 | Putative molecular chaperone, small heat shock protein, Hsp20 family | Â | Â | -0.7 |
LSA0082 | htrA | Serine protease HtrA precursor, trypsin family | Â | -0.6 | Â |
LSA0207 | clpL | ATPase/chaperone ClpL, putative specificity factor for ClpP protease | 0.6 | Â | Â |
LSA0358 | groS | Co-chaperonin GroES (10 kD chaperonin) (protein Cpn10) | Â | Â | -0.5 |
LSA0359 | groEL | Chaperonin GroEL (60 kDa chaperonin) (protein Cpn60) | Â | Â | -0.5 |
LSA0436 | lsa0436 | Putative peptidylprolyl isomerase (peptidylprolyl cis-trans isomerase) (PPIase) | Â | Â | -0.6 |
LSA0984 | hslU | ATP-dependent Hsl protease, ATP-binding subunit HslU | 0.7 | Â | 0.7 |
LSA1465 | clpE | ATPase/chaperone ClpE, putative specificity factor for ClpP protease | -0.7 | -0.6 | -0.6 |
LSA1618 | htpX | Membrane metalloprotease, HtpX homolog | Â | 0.8 | Â |
Adaption to atypical conditions | |||||
LSA0170 | lsa0170 | Putative general stress protein | 0.5 | Â | -1.5 |
LSA0247 | usp2 | Similar to universal stress protein, UspA family | Â | Â | -0.5 |
LSA0264 | lsa0264 | Putative glycine/betaine/carnitine/choline transport protein | -0.6 | Â | -0.6 |
LSA0513 | lsa0513 | Putative stress-responsive transcriptional regulator | Â | -0.8 | Â |
LSA0552 | lsa0552 | Organic hydroperoxide resistance protein | Â | 0.6 | Â |
LSA0616 | lsa0616 | Putative glycine/betaine/carnitine/choline ABC transporter, ATP-binding subunit | 0.9 | Â | Â |
LSA0617 | lsa0617 | Putative glycine/betaine/carnitine/choline ABC transporter, membrane-spanning subunit | 1.3 | Â | Â |
LSA0618 | lsa0618 | Putative glycine/betaine/carnitine/choline ABC transporter, substrate-binding lipoprotein | 0.6 | Â | Â |
LSA0619 | lsa0619 | Putative glycine/betaine/carnitine/choline ABC transporter, membrane-spanning subunit | 1.5 | 0.5 | Â |
LSA0642 | usp3 | Similar to universal stress protein, UspA | 0.9 | Â | Â |
LSA0768 | csp1 | Similar to cold shock protein, CspA family | 2.1 | 0.6 | 1.8 |
LSA0836 | usp6 | Similar to universal stress protein, UspA family | 0.6 | Â | Â |
LSA0946 | csp4 | Similar to cold shock protein, CspA family | 0.6 | Â | Â |
LSA1110 | lsa1110 | Putative NifU-homolog involved in Fe-S cluster assembly | Â | 0.6 | Â |
LSA1111 | lsa1111 | Putative cysteine desulfurase (class-V aminotransferase, putative SufS protein homologue) | Â | 0.7 | Â |
LSA1173 | usp4 | Similar to universal stress protein, UspA family | 1.5 | -2.1 | Â |
LSA1694 | lsa1694 | Putative glycine/betaine/carnitine ABC transporter, substrate binding lipoprotein precursor | -1.7 | Â | -1.1 |
LSA1695 | lsa1695 | Putative glycine/betaine/carnitine ABC transporter, membrane-spanning subunit | -2.1 | -2.0 | -1.9 |
LSA1696 | lsa1696 | Putative glycine/betaine/carnitine ABC transporter, ATP-binding subunit | -1.6 | Â | -0.9 |
LSA1870 | lsa1870 | Putative glycine betaine/carnitine/choline ABC transporter, ATP-binding subunit | -0.6 | Â | -0.6 |
Protein modification | |||||
LSA0865 | lsa0865 | Putative protein methionine sulfoxide reductase | Â | -0.6 | Â |
LSA0866 | msrA | Protein methionine sulfoxide reductase | Â | -0.7 | Â |
LSA0934 | lplA | Lipoate-protein ligase | 1.6 | 1.4 | 1.0 |
LSA0973 | pflA | Pyruvate formate-lyase activating enzyme | 1.7 | Â | Â |
General function prediction only | |||||
Miscellaneous | |||||
LSA0030 | lsa0030 | Putative aldo/keto reductase (oxidoreductase) | Â | -0.7 | -0.8 |
LSA0120 | lsa0120 | Putative GTP-binding protein | -0.5 | Â | Â |
LSA0164 | lsa0164 | Putative serine/tyrosine protein phosphatase | 0.2 | -1.1 | -1.2 |
LSA0165 | lsa0165 | Putative oxidoreductase, short chain dehydrogenase/reductase family | Â | -0.9 | -1.2 |
LSA0218 | trxA1 | Thioredoxin | Â | -0.9 | Â |
LSA0258 | lsa0258 | Putative iron-containing alcohol dehydrogenase | 1.6 | 0.5 | 1.6 |
LSA0260 | lsa0260 | Putative aldo/keto reductase (oxidoreductase) | 1.9 | 1.2 | 1.7 |
LSA0312 | lsa0312 | Putative NADH oxidase | -0.9 | Â | -1.0 |
LSA0324 | lsa0324 | Putative hydrolase, haloacid dehalogenase family (N-terminal fragment), authentic frameshift | 1.9 | Â | Â |
LSA0325 | lsa0325 | Putative hydrolase, haloacid dehalogenase family (C-terminal fragment), authentic frameshift | 1.8 | Â | Â |
LSA0350 | lsa0350 | Putative N-acetyltransferase, GNAT family | -0.5 | Â | Â |
LSA0369 | lsa0369 | Putative N-acetyltransferase, GNAT family | -0.5 | Â | -0.5 |
LSA0384 | lsa0384 | Putative phosphoesterase, DHH family | -0.5 | Â | Â |
LSA0403 | lsa0403 | Putative thioredoxin reductase | Â | 0.9 | Â |
LSA0447 | lsa0447 | Putative hydrolase, haloacid dehalogenase family | Â | Â | 0.6 |
LSA0475 | lsa0475 | Putative N-acetyltransferase, GNAT family | Â | -0.6 | Â |
LSA0520 | trxB2 | Thioredoxin reductase | -0.8 | Â | Â |
LSA0575 | npr | NADH peroxidase | 1.0 | U | Â |
LSA0802 | nox | NADH oxidase | 1.5 | Â | Â |
LSA0806 | lsa0806 | Putative N-acetyltransferase, GNAT family | 0.6 | Â | Â |
LSA0831 | lsa0831 | Putative nitroreductase (oxidoreductase) | Â | 1.6 | Â |
LSA0896 | sodA | Iron/Manganese superoxide dismutase | 3.4 | 1.7 | 1.7 |
LSA0925 | adh | Putative zinc-containg alcohol dehydrogenase (oxidoreductase) | 0.5 | Â | Â |
LSA0971 | ppa | Inorganic pyrophosphatase (pyrophosphate phosphohydrolase) | 0.7 | Â | Â |
LSA0994 | lsa0994 | Putative GTP-binding protein | Â | Â | 0.6 |
LSA1016 | engA | Putative GTP-binding protein | 0.6 | Â | 0.7 |
LSA1045 | obgE | Putative GTP-binding protein | 0.6 | Â | Â |
LSA1153 | lsa1153 | Hypothetical protein, CAAX protease family | 0.5 | Â | Â |
LSA1311 | lsa1311 | Hypothetical protein containing a possible heme/steroid binding domain | 0.7 | -0.6 | Â |
LSA1320 | lsa1320 | Putative NADPH-quinone oxidoreductase | Â | -0.8 | Â |
LSA1345 | lsa1345 | Putative hydrolase, haloacid dehalogenase family | 0.5 | Â | Â |
LSA1349 | lsa1349 | Putative N-acetyltransferase, GNAT family | Â | -0.5 | Â |
LSA1365 | lsa1365 | Hypothetical protein | Â | -0.5 | -0.7 |
LSA1368 | lsa1368 | Hypothetical protein | 0.9 | Â | 0.6 |
LSA1371 | lsa1371 | Hypothetical membrane protein | 0.6 | Â | Â |
LSA1395 | lsa1395 | Putative zinc-containing alcohol dehydrogenase (oxidoreductase) | 0.9 | Â | Â |
LSA1427 | lsa1427 | Putative hydrolase, haloacid dehalogenase | 1.3 | Â | 0.6 |
LSA1472 | lsa1472 | Putative N-acetyl transferase, GNAT family | 0.6 | Â | Â |
LSA1535 | lsa1535 | Putative oxidoreductase | 0.5 | 1.1 | 0.7 |
LSA1553 | lsa1553 | Putative hydrolase, haloacid dehalogenase family | -0.6 | Â | Â |
LSA1559 | lsa1559 | Putative oxidoreductase | 0.6 | 1.1 | 0.7 |
LSA1702 | lsa1702 | Putative zinc-containing alcohol dehydrogenase (oxidoreductase) | 1.1 | Â | Â |
LSA1712 | lsa1712 | Putative nitroreductase (oxidoreductase) | Â | -0.7 | -0.8 |
LSA1832 | lsa1832 | Putative zinc-containing alcohol dehydrogenase (oxidoreductase) | Â | 1.0 | Â |
LSA1835 | lsa1835 | Putative zinc-containing alcohol dehydrogenase (oxidoreductase) | -0.7 | Â | -1.0 |
LSA1867 | lsa1867 | Putative acetyltransferase, isoleucine patch superfamily | -0.5 | -0.6 | -0.7 |
LSA1871 | gshR | Glutathione reductase | -0.6 | Â | Â |
Unknown | |||||
Proteins of unknown function that are similar to other proteins | |||||
LSA0018 | lsa0018 | Hypothetical protein | Â | 0.5 | Â |
LSA0027 | lsa0027 | Hypothetical protein | Â | Â | -1.1 |
LSA0028 | lsa0028 | Hypothetical protein, DegV family | -0.5 | Â | Â |
LSA0044 | lsa0044 | Hypothetical protein | Â | Â | -0.7 |
LSA0061 | lsa0061 | Hypothetical extracellular protein precursor | -0.5 | Â | Â |
LSA0106 | lsa0106 | Hypothetical cell surface protein precursor | 0.5 | Â | Â |
LSA0160 | lsa0160 | Hypothetical protein | -0.7 | Â | Â |
LSA0166 | lsa0166 | Hypothetical Integral membrane protein | Â | Â | -1.2 |
LSA0190 | lsa0190 | Hypothetical integral membrane protein | -0.7 | Â | -0.6 |
LSA0191 | lsa0191 | Hypothetical integral membrane protein | -0.6 | Â | -0.6 |
LSA0199 | lsa0199 | Hypothetical protein | 1.1 | 1.0 | 1.1 |
LSA0208 | lsa0208 | Hypothetical integral membrane protein | 0.7 | Â | Â |
LSA0235 | lsa0235 | Hypothetical extracellular protein precursor | 2.1 | 1.6 | 1.7 |
LSA0236 | lsa0236 | Hypothetical extracellular peptide precursor | 2.0 | 1.3 | 1.5 |
LSA0244 | lsa0244 | Hypothetical integral membrane protein | Â | Â | -0.5 |
LSA0245 | lsa0245 | Hypothetical lipoprotein precursor | -0.9 | -1.0 | -1.1 |
LSA0249 | lsa0249 | Hypothetical protein | 1.1 | 1.0 | Â |
LSA0263 | lsa0263 | Hypothetical integral membrane protein | -0.6 | Â | -0.9 |
LSA0300 | lsa0300 | Hypothetical protein | Â | Â | 0.7 |
LSA0315 | lsa0315 | Hypothetical protein | -0.7 | Â | Â |
LSA0319 | lsa0319 | Hypothetical protein | Â | -0.8 | -0.8 |
LSA0323 | lsa0323 | Hypothetical protein | Â | Â | -0.5 |
LSA0337 | lsa0337 | Hypothetical protein | -0.7 | Â | Â |
LSA0348 | lsa0348 | Hypothetical integral membrane protein | -0.9 | Â | -0.7 |
LSA0352 | lsa0352 | Hypothetical integral membrane protein | -0.6 | Â | Â |
LSA0354 | lsa0354 | Hypothetical integral membrane protein | Â | Â | -1.1 |
LSA0388 | lsa0388 | Hypothetical protein | Â | -0.6 | Â |
LSA0389 | lsa0389 | Hypothetical protein | Â | -0.7 | -0.7 |
LSA0390 | lsa0390 | Hypothetical protein | Â | -0.5 | Â |
LSA0409 | lsa0409 | Hypothetical integral membrane protein | Â | Â | -0.8 |
LSA0418 | lsa0418 | Hypothetical protein | Â | Â | -0.8 |
LSA0464 | lsa0464 | Hypothetical protein | Â | -0.6 | Â |
LSA0470 | lsa0470 | Hypothetical protein | 0.9 | Â | 0.7 |
LSA0512 | lsa0512 | Hypothetical protein | Â | -0.6 | Â |
LSA0515 | lsa0515 | Hypothetical integral membrane protein | Â | -0.5 | Â |
LSA0536 | lsa0536 | Hypothetical protein | Â | 0.7 | Â |
LSA0716 | lsa0716 | Hypothetical protein | Â | Â | 0.6 |
LSA0752 | lsa0752 | Hypothetical protein | 0.5 | Â | 0.6 |
LSA0757 | lsa0757 | Hypothetical protein | Â | 0.8 | Â |
LSA0773 | lsa0773 | Hypothetical protein | 0.9 | Â | 0.6 |
LSA0784 | lsa0784 | Hypothetical protein | -2.6 | Â | Â |
LSA0786 | lsa0786 | Hypothetical protein | -2.0 | Â | Â |
LSA0787 | lsa0787 | Hypothetical protein | -1.7 | Â | Â |
LSA0790 | lsa0790 | Hypothetical protein, ATP utilizing enzyme PP-loop family | -2.5 | Â | Â |
LSA0827 | lsa0827 | Hypothetical lipoprotein precursor | 0.8 | Â | U |
LSA0828 | lsa0828 | Hypothetical protein | 0.7 | Â | Â |
LSA0829 | lsa0829 | Hypothetical integral membrane protein | Â | Â | 0.5 |
LSA0874 | lsa0874 | Hypothetical protein | 0.5 | Â | Â |
LSA0901 | lsa0901 | Hypothetical protein | Â | Â | 0.5 |
LSA0913 | lsa0913 | Hypothetical extracellular protein precursor | 0.5 | Â | 0.7 |
LSA0919 | lsa0919 | Hypothetical protein | Â | Â | 0.7 |
LSA0933 | lsa0933 | Hypothetical protein | 0.6 | Â | 0.6 |
LSA0961 | lsa0961 | Hypothetical protein, DegV family | Â | -0.5 | Â |
LSA0968 | lsa0968 | Hypothetical integral membrane protein | 0.7 | Â | Â |
LSA0977 | lsa0977 | Hypothetical integral membrane protein | 0.7 | Â | 0.8 |
LSA0987 | lsa0987 | Hypotehtical protein, GidA family (C-terminal fragment) | 0.5 | Â | Â |
LSA0996 | lsa0996 | Hypothetical protein | Â | Â | 0.5 |
LSA1003 | lsa1003 | Hypothetical protein | 2.0 | Â | 1.2 |
LSA1005 | lsa1005 | Hypothetical membrane protein | 0.9 | 0.6 | 0.7 |
LSA1008 | lsa1008 | Putative extracellular chitin-binding protein precursor | Â | 0.9 | 1.2 |
LSA1027 | lsa1027 | Hypothetical protein | Â | Â | 0.6 |
LSA1047 | lsa1047 | Hypothetical protein | 3.5 | 1.2 | 1.3 |
LSA1064 | lsa1064 | Hypothetical protein | 0.5 | Â | 0.7 |
LSA1075 | lsa1075 | Hypothetical protein | Â | Â | 0.5 |
LSA1078 | lsa1078 | Hypothetical protein | Â | Â | 0.6 |
LSA1081 | lsa1081 | Hypothetical protein | 1.0 | Â | 1.0 |
LSA1091 | lsa1091 | Hypothetical protein | Â | Â | 0.6 |
LSA1096 | lsa1096 | Hypothetical protein | 0.6 | Â | Â |
LSA1124 | lsa1124 | Hypothetical protein | Â | -0.7 | Â |
LSA1154 | lsa1154 | Hypothetical protein | 0.6 | Â | 0.6 |
LSA1158 | lsa1158 | Hypothetical protein | 1.7 | 1.4 | Â |
LSA1189 | lsa1189 | Hypothetical integral membrane protein | -1.6 | Â | -1.1 |
LSA1282 | lsa1282 | Hypothetical protein | Â | -0.5 | Â |
LSA1296 | lsa1296 | Hypothetical integral membrane protein | Â | -1.2 | -0.8 |
LSA1342 | lsa1342 | Hypothetical protein | Â | -0.7 | Â |
LSA1346 | lsa1346 | Hypothetical protein | 0.8 | Â | Â |
LSA1350 | lsa1350 | Hypothetical protein | Â | -0.6 | -1.0 |
LSA1353 | lsa1353 | Hypothetical integral membrane protein | -0.9 | -0.5 | Â |
LSA1446 | lsa1446 | Hypothetical protein | -0.6 | -0.6 | -0.7 |
LSA1466 | lsa1466 | Hypothetical protein | 0.6 | Â | Â |
LSA1467 | lsa1467 | Hypothetical protein | Â | -0.6 | -1.1 |
LSA1524 | lsa1524 | Hypothetical protein | 0.7 | Â | Â |
LSA1540 | lsa1540 | Hypothetical extracellular protein precursor | 0.7 | Â | Â |
LSA1563 | lsa1563 | Hypothetical integral membrane protein | Â | -0.6 | -0.6 |
LSA1610 | lsa1610 | Hypothetical integral membrane protein | -0.7 | Â | -0.9 |
LSA1617 | lsa1617 | Hypothetical protein | Â | Â | -0.7 |
LSA1620 | lsa1620 | Hypothetical protein | Â | Â | -0.6 |
LSA1623 | lsa1623 | Hypothetical integral membrane protein | -0.5 | Â | -0.6 |
LSA1637 | lsa1637 | Hypothetical integral membrane protein, TerC family | -1.7 | -1.0 | -1.6 |
LSA1644 | lsa1644 | Hypothetical protein | 1.7 | Â | D |
LSA1649 | lsa1649 | Hypothetical extracellular protein precursor | Â | Â | -0.5 |
LSA1659 | lsa1659 | Hypothetical protein | -0.5 | Â | Â |
LSA1662 | lsa1662 | Hypothetical protein | -1.0 | -0.6 | -0.7 |
LSA1663 | lsa1663 | Hypothetical protein | -0.8 | Â | Â |
LSA1678 | lsa1678 | Hypothetical protein | -0.6 | Â | Â |
LSA1680 | lsa1680 | Hypothetical protein | -0.6 | Â | Â |
LSA1716 | lsa1716 | Hypothetical protein | Â | -0.5 | Â |
LSA1822 | lsa1822 | Hypothetical protein | Â | Â | -0.5 |
LSA1828 | lsa1828 | Hypothetical integral membrane protein | 0.6 | 0.7 | Â |
LSA1850 | lsa1850 | Hypothetical protein | Â | -0.6 | Â |
LSA1876 | lsa1876 | Hypothetical integral membrane protein | Â | Â | -0.6 |
LSA1877 | lsa1877 | Hypothetical protein | Â | Â | -0.6 |
Proteins of unknown function only similar to other proteins from the same organism | |||||
LSA1159 | lsa1159 | Hypothetical cell surface protein precursor | 2.0 | Â | 0.5 |
LSA1165 | lsa1165 | Hypothetical cell surface protein precursor | 1.8 | Â | Â |
LSA1700 | lsa1700 | Hypothetical protein | 2.1 | 0.8 | Â |
LSA1814 | lsa1814 | Hypothetical protein | Â | Â | -0.5 |
Proteins of unknown function. without similarity to other proteins | |||||
LSA0065 | lsa0065 | Hypothetical integral membrane protein | -0.5 | Â | Â |
LSA0093 | lsa0093 | Hypothetical integral membrane protein | -0.9 | Â | -1.2 |
LSA0121 | lsa0121 | Hypothetical small peptide | -0.7 | -0.6 | -0.5 |
LSA0163 | lsa0163 | Hypothetical protein | Â | -1.1 | -1.3 |
LSA0167 | lsa0167 | Hypothetical protein | Â | Â | -1.4 |
LSA0168 | lsa0168 | Hypothetical protein | Â | Â | -1.4 |
LSA0188 | lsa0188 | Hypothetical small peptide | Â | Â | -0.8 |
LSA0256_a | lsa0256_a | Hypothetical protein | 2.3 | 1.0 | 2.2 |
LSA0257 | lsa0257 | Hypothetical protein | 1.4 | Â | Â |
LSA0281 | lsa0281 | Hypothetical lipoprotein precursor | Â | -0.5 | -0.6 |
LSA0301 | lsa0301 | Hypothetical protein | Â | Â | 0.6 |
LSA0334 | lsa0334 | Hypothetical extracellular protein precursor | 1.1 | Â | Â |
LSA0339 | lsa0339 | Hypothetical protein | -0.5 | Â | Â |
LSA0378 | lsa0378 | Hypothetical protein | -0.7 | Â | Â |
LSA0514 | lsa0514 | Hypothetical small extracellular protein precursor | Â | -0.8 | Â |
LSA0534 | lsa0534 | Hypothetical cell surface protein precursor (with LPQTG sorting signal) | 1.0 | Â | D |
LSA0576 | lsa0576 | Hypothetical protein | 0.5 | D | Â |
LSA0641 | lsa0641 | Hypothetical extracellular peptide precursor | Â | -0.5 | Â |
LSA0647 | lsa0647 | Hypothetical extracellular protein precursor | 0.6 | Â | Â |
LSA0667 | lsa0667 | Hypothetical protein | 1.0 | Â | 0.9 |
LSA0753 | lsa0753 | Hypothetical integral membrane protein | Â | Â | 0.5 |
LSA0789 | lsa0789 | Hypothetical protein | -1.9 | Â | Â |
LSA0837 | lsa0837 | Hypothetical protein | 1.2 | 1.3 | 1.4 |
LSA0885 | lsa0885 | Hypothetical protein | 1.8 | Â | Â |
LSA0902 | lsa0902 | Hypothetical protein | 0.7 | D | Â |
LSA0945 | lsa0945 | Hypothetical protein | Â | Â | 0.9 |
LSA1019 | lsa1019 | Hypothetical cell surface protein precursor | Â | Â | 0.8 |
LSA1035 | lsa1035 | Hypothetical small integral membrane protein | Â | Â | 0.6 |
LSA1086 | lsa1086 | hypothetical protein | 0.8 | Â | 0.5 |
LSA1104 | lsa1104 | Hypothetical protein | -0.5 | Â | Â |
LSA1155 | lsa1155 | Hypothetical integral membrane protein | 0.5 | Â | Â |
LSA1174 | lsa1174 | Hypothetical protein | 1.0 | Â | Â |
LSA1176 | lsa1176 | Hypothetical protein | Â | -1.0 | U |
LSA1319 | lsa1319 | Hypothetical small protein | Â | -0.8 | Â |
LSA1408 | lsa1408 | Hypothetical protein | Â | Â | 0.6 |
LSA1464 | lsa1464 | Hypothetical protein | -0.6 | Â | Â |
LSA1478 | lsa1478 | Hypothetical protein | -0.7 | -0.6 | -0.6 |
LSA1480 | lsa1480 | Hypothetical membrane protein | 0.5 | D | Â |
LSA1524 | lsa1524 | Hypothetical protein | 0.8 | Â | Â |
LSA1539 | lsa1539 | Hypothetical protein | 0.9 | Â | Â |
LSA1713 | lsa1713 | Hypothtical small peptide | Â | Â | -0.6 |
LSA1787 | lsa1787 | Hypothetical cell surface protein precursor | -0.5 | U | Â |
LSA1820 | lsa1820 | Hypothetical cell surface protein precursor | Â | Â | -0.6 |
LSA1821 | lsa1821 | Hypothetical cell surface protein precursor | Â | -0.6 | Â |
LSA1845 | lsa1845 | Hypothetical small protein | Â | 0.8 | Â |
LSA1848 | lsa1848 | Hypothetical protein | Â | Â | -0.5 |
LSA1851 | lsa1851 | Hypothetical extracellular small protein | -0.6 | Â | -0.7 |
LSA1883 | lsa1883 | Hypothetical small protein | 1.2 | Â | 1.5 |
Bacteriocin associated genes | |||||
SKP0001 | sppIP | Bacteriocin sakacin P inducing peptide | D | 0.5 | D |
SKP0006 | sppT | Sakacin P ABC transporter | D | 0.6 | D |
SKP0007 | sppE | Sakacin P accesory transport protein | D | 0.6 | D |