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Table 3 IS629 element presence/absence in CC strains from the O157:H7 stepwise evolutionary model

From: Prevalence, distribution and evolutionary significance of the IS629 insertion element in the stepwise emergence of Escherichia coliO157:H7

     

A6

       

A5

    

A4

   

A2

 

A1

 

A?

 

A6

NR

Phage

Or

backbone

1

2

3

4

5

6

7

8

9

10

11

12

13

14

15

16

17

18

19

20

21

22

23

24

25

26

27

IS.1

Sp 4

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

IS.2

Sp 4

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

IS. 3

Sp 5 stx2

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

-

IS. 4

SpLE 1

-

+

-

-

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 5

SpLE 1

+

+

+

+

+

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS. 6

SpLE 1

-

+

-

-

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 7

SpLE 1

+

+

+

+

+

-

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS. 8

Sp 8

+

-

+

-

+

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

-

IS. 9

Sp 8

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

IS. 10

back

+

+

-

-

+

-

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS. 11

back

+

+

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS. 12

Sp 12

+

-

-

-

-

-

-

-

-

-

-

+

+

+

-

-

-

-

-

-

-

-

-

-

-

+

-

IS. 13

back

+

+

+

+

+

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS. 14

Sp 13

+

+

+

+

+

+

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS. 15

Sp 14

+

+

+

+

+

+

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

-

IS.16

SpLE 2

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

IS. 17

back

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS. 18

Sp 15 stx1

+

+

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS. 19

back

+

-

+

+

+

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

-

IS. 20

Sp 17

+

-

+

+

+

-

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

-

IS. 21

SpLE3

+

+

-

+

+

+

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS.22

back

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

IS. 23

SpLE 5

+

+

-

-

+

-

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS. 24

SpLE 1

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

IS. 25

SpLE 1

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

IS.26

933O

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

IS. 27

SpLE 2

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

IS.28

933Y

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

IS. 29

Sp 1

-

-

+

+

-

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 30

Sp 4

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 31

Phage

-

-

+

+

-

-

-

-

+

+

-

+

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 32

back

-

-

+

+

-

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 33

Sp 13

-

-

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 34

back

-

-

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 35

Sp 5 stx 2

-

-

+

+

-

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS.36

back

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

IS. 37

Phage

-

-

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

-

IS. 38

back

-

-

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 39

(gne gene)

-

-

-

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 40

pO157

+

-

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

-

IS. 41

pO157

+

+

+

+

+

+

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS. 42

pO157

-

-

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

+

+

IS.43

pO157

                           

IS. 44

pO157

-

-

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 45

pO157

-

-

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS. 46

back

-

-

-

+

-

-

-

-

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

IS.47

back

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

IS.48

pO157

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

ND

  1. IS629 sites were numbered from 1 - 47 (NR) starting with all sites in Sakai, followed by all additional, unshared sites from EDL933, EC4115, the sites found in the plasmids and unshared sites of strain TW1435. The newly found IS629 insertion in O rough:H7 strain MA6 was numbered IS.39 [4]. A1 - A6 are strains belonging to the different clonal complexes.
  2. Sp - Phage; SpLE - Phage-like element; back - backbone; ND -Not determined, primers failed to amplify the region.
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BMC Microbiology

ISSN: 1471-2180

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