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Table 1 Summary of pyrosequencing data from Yorkshire swine fecal samples

From: Comparative fecal metagenomics unveils unique functional capacity of the swine gut

 

Yorkshire Pig Fecal Metagenome GS20

Yorkshire Pig Fecal Metagenome FLX

Total no. of sequences

157,221

462,501

Total sequence size (bp)

24,518,676

106,193,719

Average sequence length (bp)

155.95

229.61

Genes*

42677

124684

CDS*

42349 (99.23%)

124050 (99.49%)

RNA*

328 (.77%)

634 (.51%)

rRNA*

328

634

5S

25

46

16S

114

248

18S

1

2

23S

181

325

28S

1

3

Ribosomal Database Project 16S rDNA hits

328 (0.21%)

1100 (.24%)

Greengenes 16S rDNA hits

295 (0.19%)

912 (0.20%)

w/Func Prediction*

33249 (77.9%)

93804 (75.2%)

COG*

33997 (79.7%)

97053 (77.8%)

Pfam*

34589 (81.0%)

99027 (79.4%)

TIGRfam*

16117 (37.8%)

44040 (35.3%)

Genome Properties*

3881 (9.1%)

10599 (8.5%)

Signalp*

11125 (26.1%)

35780 (28.7%)

TransMb*

8863 (20.8%)

26949 (21.6%)

MetaCyc*

3694 (8.7%)

10815 (8.7%)

  1. * Indicates that these summary statistics were generated using the IMG/M-ER annotation system offered through the Joint Genome Institute [4] using the proxygene method [34].