From: Comparative fecal metagenomics unveils unique functional capacity of the swine gut
 | Yorkshire Pig Fecal Metagenome GS20 | Yorkshire Pig Fecal Metagenome FLX |
---|---|---|
Total no. of sequences | 157,221 | 462,501 |
Total sequence size (bp) | 24,518,676 | 106,193,719 |
Average sequence length (bp) | 155.95 | 229.61 |
Genes* | 42677 | 124684 |
CDS* | 42349 (99.23%) | 124050 (99.49%) |
RNA* | 328 (.77%) | 634 (.51%) |
rRNA* | 328 | 634 |
5S | 25 | 46 |
16S | 114 | 248 |
18S | 1 | 2 |
23S | 181 | 325 |
28S | 1 | 3 |
Ribosomal Database Project 16S rDNA hits | 328 (0.21%) | 1100 (.24%) |
Greengenes 16S rDNA hits | 295 (0.19%) | 912 (0.20%) |
w/Func Prediction* | 33249 (77.9%) | 93804 (75.2%) |
COG* | 33997 (79.7%) | 97053 (77.8%) |
Pfam* | 34589 (81.0%) | 99027 (79.4%) |
TIGRfam* | 16117 (37.8%) | 44040 (35.3%) |
Genome Properties* | 3881 (9.1%) | 10599 (8.5%) |
Signalp* | 11125 (26.1%) | 35780 (28.7%) |
TransMb* | 8863 (20.8%) | 26949 (21.6%) |
MetaCyc* | 3694 (8.7%) | 10815 (8.7%) |