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Table 1 Homologies of the transcript derived fragments (TDFs) to known sequences in the databases.

From: Identification of genes differentially expressed during interaction of Mexican lime tree infected with "Candidatus Phytoplasma aurantifolia"

TDF

Length

(bp)

Accession number

I/R

Annotation (plant, accession number)

E-value

Stress response/defense

   

Gh16122

444

GT222039

I

Proline-rich protein (Cladrastis kentukea, AAG15241.1)

1e-12

Gh11114

158

GT222037

R

Modifier of snc1 (Ricinus communis, XP_002522998.1)

6e-04

Gh11112

157

GT222036

R

Modifier of snc1 (Ricinus communis, XP_002522998.1)

6e-4

Gh921

191

GT222045

R

Autophagy protein 5 (Glycine max, AM087008.1)

3e-19

Gh8221.1

198

GT222040

R

Autophagy protein 5 [Glycine max, AM087008.1)

5e-08

Gh8221.2

190

GT222035

R

Autophagy protei n (Glycine max, AM087008.1)

4e-19

Gh821

191

GT222047

R

Autophagy protein 5 (Glycine ma x AM087008.1)

1e-29

Gh542

316

GT222056

I

hypothetical protein with lysine domain (Medicago sativa, XP_002278178.1)

3e-22

Gh7111

69

GT222032

I

Serine-rich protein-related, Cichorium intybus, TA1423_13427

7e-51

Gh16121

162

GT222038

I

Serine-rich protein-related, Cichorium intybus, TA1423_13427

1e-49

Cell Metabolism

   

Gh1574

526

GT222018

I

Phosphatidyl glycerol specific phospholipase C-like (Sweet orange, EY651478.1)

1e-40

Gh511

113

GT222066

R

L-asparaginase (Ricinus communis, ref-XM_002510114.1)

5e-06

Gh7123

263

GT222042

R

Glycerophosphoryl diester phosphodiesterase (Ricinus communis, XP_002512887.1)

4e-27

Gh532

181

GT222058

R

Retroelement pol polyprotein-like (Arabidopsis thaliana , BAB10790)

1e-14

Protein synthesis/destination

   

Gh1633

416

GT222024

I

50 S ribosomal protein L15 (Ricinus communis, XP_002531621.1)

2e-19

Gh1631

416

GT222023

R

50 S ribosomal protein L15 (Ricinus communis, XP_002531621.1)

5e-18

Gh553-2

323

GT222065

R

Ubiquitin-protein ligase (Vitis vinifera, XM_002305323.1)

4e-09

Gh553-1

181

GT222064

R

Ubiquitin-protein ligase (Vitis vinifera, XM_002305323.1

1e-11

Signal transduction Protein

   

Gh1822

161

GT222030

R

Transducin family protein (Arabidopsis thaliana, NM_180281.2)

5e-15

Gh1821

160

GT222029

R

Transducin family protein (Arabidopsis thaliana, NM_180281.2)

4e-16

Gh324

241

GT222061

I

Serine/threonine-protein kinase (Ricinus communis, XM_002531749.1)

3e-15

Transporter

    

Gh1572

380

GT222017

I

Similar to Importin β 3 (Citrus clementina, DY277746)

2e-13

Gh1521

402

GT222015

I

Similar to Importin β 3 (Citrus clementina, DY277746)

5e-14

Transcription

    

Gh1591

722

GT222019

R

RNA polymerase beta' gene, partial cds; chloroplast. (Citrus sinensis, YP_740466.1)

2e-139

Cytoskeleton

   

Gh1811

148

GT222028

R

Formin (Ricinus communis, XP_002532961.1)

2e-04

Unknown function

    

Gh7101

108

GT222044

R

Root salinity induced TDF (Spartina alterniflora, DR010701.1)

3e-05

Gh1511

123

GT222014

R

Poncirus trifoliata Roots with Iron Deficiency, CX640377.1)

2e-06

Gh521

195

GT222059

R

subtracted infection mimic Phytophthora infestans cDNA (CV945240.1)

4e-121

Gh1623

119

GT222021

R

Leaf infected with Xylella fastidiosa (Sweet orange, EY666062.1)

3e-09

Gh821

191

GT222047

R

Development (Citrus sinensis cDNA, EY722243.1)

1e-29

Gh1661

203

GT222025

R

Phloem Citrus sinensis cDNA clone (Citrus sinensis, DR910976.1)

2e-74*

Gh1624

589

GT222022

R

Mexican lime leaf, greenhouse plant, EY854330.1

8e-08

Gh721

110

GT222054

R

root salinity induced TDF (Spartina alterniflora, DR010701.1)

3e-09

Gh541

308

GT222057

R

Plant transcript (Citrus sinensis, TA16449_2711)

2e-50

Gh543

314

GT222055

I

Slow drought stressed root cDNA library (Cicer arietinum, GR410097.1)

6e-122

Gh734

36

GT222052

R

Slow drought stressed root cDNA library (Cicer arietinum, GR410033.1)

6e-122

  1. TDFs were cloned and sequenced from one health (R; repressed) or infected (I; induced) plant.