Databases | Reference | Features predicted | Genome(s) | Protein numbers |
---|---|---|---|---|
EchoLOCATION | [124] | Subcellular-location (EXP) | E. coli K-12 | 4330 (506 exp) |
Ecce | _ | Subcellular-location | E. coli K-12 | 306 |
LocateP DataBase | [89] | Subcellular-location | 178 MD | 542788 |
cPSORTdb | [91] | Subcellular-location | 140 BA | 1634278 |
ePSORTdb | [91] | Subcellular-location (EXP) | Â | 2165 |
THGS | [125] | Transmembrane Helices | 689 PROK | 465411 |
Augur | [88] | Subcellular-location | 126 MD | 111223 |
CW-PRED | [126] | Cell-anchored (surface) | 94 MD | 954 |
PROFtmb | [78] | Beta-barrel (OM) | 78 DD/19 MD | 2152 |
HHomp | [127] | Beta-barrel (OM) | Â | 12495 |
PRED-LIPO | [58] | Lipoprotein SPs | 179 MD | 895 |
SPdb | [90] | Signal peptides (SPs) | 855 PROK | 7062 |
ExProt | [128] | Signal peptides (SPs) | 23 AR/61 MD/115DD | Â |
Signal Peptide Website | _ | Signal peptides (SPs) | 384 BA | 1161 (EXP) |
PRED-SIGNAL | [129] | Signal peptides (SPs) | 48 AR | 9437 |
TMPDB | [130] | Alpha Helices & Beta-barrel | Â | 188 |
DTTSS | Shandong Univ. | Type III secretion system | Â | 1035 |
TOPDB | [131] | Transmembrane Proteins | 755 BA/16 AR | Â |
TMBC-Database | Andrew Garrow | Transmembrane Beta-barrel | Â | 1219 |
Swissprot signal testset | [132] | Signal peptides (SPs) (EXP) | 176 SP+/122 SP- | Â |