Program | Reference | Analytical method | CoBaltDB features prediction group(s) | ||||
---|---|---|---|---|---|---|---|
LipoP 1.0 Server | [59] | HMM + NN | LIPO | Â | SEC | Â | Â |
DOLOP | [57] | RE | LIPO | Â | Â | Â | Â |
LIPO | [56] | RE | LIPO | Â | Â | Â | Â |
TatP 1.0 | [53] | RE + NN | Â | TAT | Â | Â | Â |
TATFIND 1.4 | [52] | RE | Â | TAT | Â | Â | Â |
PrediSi | [112] | Position weight matrix | Â | Â | SEC | Â | Â |
SignalP 3.0 Server | HMM + NN | Â | Â | SEC | Â | Â | |
SOSUIsignal | [113] | Multi-programs | Â | Â | SEC | Â | Â |
SIG-Pred | J.R. Bradford | Matrix | Â | Â | SEC | Â | Â |
RPSP | [44] | NN | Â | Â | SEC | Â | Â |
Phobius | HMM |  |  | SEC | αTMB |  | |
HMMTOP | [71] | HMM |  |  |  | αTMB |  |
TMHMM Server v.2.0 | [70] | HMM |  |  |  | αTMB |  |
TM-Finder | [65] | AA FEATURES |  |  |  | αTMB |  |
SOSUI | [114] | AA FEATURES |  |  |  | αTMB |  |
SVMtm | [73] | SVM |  |  |  | αTMB |  |
SPLIT 4.0 Server | [115] | AA FEATURES |  |  |  | αTMB |  |
MCMBB | [116] | HMM |  |  |  |  | βBarrel |
TMBETADISC: | [117] | Â | Â | Â | Â | Â | Â |
_COMP |  | AA FEATURES |  |  |  |  | βBarrel |
_DIPEPTIDE |  | Dipeptide composition |  |  |  |  | βBarrel |
_MOTIF |  | Motif(s) |  |  |  |  | βBarrel |
TMB-Hunt2 | [118] | SVM |  |  |  |  | βBarrel |