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Table 1 Genomic patterns of mycobacterial strains isolated from different clinical samples of the same patient.

From: First insights into the genetic diversity of Mycobacterium tuberculosis isolates from HIV-infected Mexican patients and mutations causing multidrug resistance

Patient

Strain code

Clinical sample

Mycobacterial specie

Spoligotyping Share type (ST) number

RFLP cluster

MIRU-VNTR (code number)

1

IPN 24

Pleural effusion

MTb

ST42

16

23'3216153321

 

IPN 25

urine

MTb

ST42

16

225225153323

2

IPN 29

Urine

MTb

ST732

12

220326153322

 

IPN 31

Sputum

MTb

ST732

12

223326153322

3

IPN 64

Urine

MTb

ST119

9

223224153323

 

IPN 67

Bronchoalveolar lavage fluid

MTb

ST119

10

23'3226133321

4

IPN 69

Urine

MTb

?h

23

332226153322

 

IPN 70

Bronchoalveolar lavage fluid

MTb

?h

23

225223153322

5

IPN 74

Urine

MTb

ST50

1

223225123322

 

IPN 75

Sputum

MTb

ST50

1

224325153324

6

IPN 10

Bone marrow

MTb

ST42

15

23'3226133321

 

IPN 11

Sputum

MTb

ST42

15

225225153323

 

IPN 12

Bronchoalveolar lavage fluid

MTb

ST42

15

225226143323

7

IPN 15

Pleural effusion

MTb

?b

223326133321

 

IPN 16

Sputum

MTb

?b

223326133321

 

IPN 17

Gastric fluid

MTb

?b

223226133322

8

IPN 85

Bone marrow

MTb

ST508

8

220225150020

 

IPN 86

Bronchoalveolar lavage fluid

MTb

ST508

8

223225153321

 

IPN 87

Sputum

MTb

ST508

8

220005153320

9

IPN 43

Pleural effusion

M. bovis

ST1306

ND

232224253322

 

IPN 99

Lymph node

M. bovis

ST1625

ND

232224253322

10

IPN 56

Urine

M. bovis

ST409

ND

232224153323

 

IPN 57

Sputum

M. bovis

ST409

ND

222224053320

 

IPN 58

Cerebrospinal fluid

M. bovis

?i

ND

232224253322

11

IPN 46

Cerebrospinal fluid

M. bovis

ST683

ND

232224152320

 

IPN 47

Cerebrospinal fluid

M. bovis

ST479

ND

332224153322

 

IPN 48

Gastric fluid

M. bovis

?j

ND

232225153322

 

IPN 49

Sputum

M. bovis

ST479

ND

332225153322

12

IPN 1

Bone marrow

M. avium

ND

ND

ND

 

IPN 3

Gastric fluid

M. avium

ND

ND

ND

13

IPN 41

Bone marrow

M. avium

ND

ND

ND

 

IPN 60

Lymph node

M. avium

ND

ND

ND

  1. MTb, M. tuberculosis. ND, No determined, ?b, Spoligotype octal, 777743677760771, ?h, Spoligotype octal 777777660000131, ?i, Spoligotype octal 264063776776600, ?j, Spoligotype octal 677767777777600, , M. tuberculosis strains with zero-copy-numbers of IS6110.