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Table 2 Conserved VirR regulon

From: Comparative genomics of VirR regulons in Clostridium perfringens strains

Product

Genomes

REF

 

ATCC13124

Str.13

SM101

F4969†

JGS1721†

JGS1495†

JGS1987†

ATCC3626†

 

α -clostripain

CPF_0840

CPE0846

CPR_0833

AC5_0918

CJD_0991

CPC_0878

AC3_1028

AC1_0991

[7]

ccp

1.52

1.52

1.52

1.52

1.52

1.52

1.52

1.52

 

Reg. RNA

CPF_1204

CPE0957

 

AC5_1228

CJD_1316

CPC_1202

AC3_1326

AC1_1388

"

vrr

1.31

1.31

 

1.31

1.21

1.31

1.31

1.31

 

Perfringolysin O

CPF_0156

CPE0163

 

AC5_0210

CJD_0196

CPC_0186

AC3_0278

AC1_0175

"

pfoA

1.18

1.18

 

1.18

1.18

1.18

1.18

1.18

 

Reg. RNA

CPF_0925

CPE0920

 

*

CJD_1073

*

AC3_1102

AC1_1131

"

virU

1.20

1.20

 

1.26

1.26

1.20

1.20

1.20

 

hypothetical

CPF_1074

 

CPR_0937

**

  

**

**

[8]

 

0.88

 

1.11

1.03

  

1.03

1.03

 

hypothetical

CPF_0461

 

CPR_0762

    

AC1_0537

"

 

1.28

 

1.38

    

1.28

 

hypothetical

   

AC5_0209

 

CPC_0185

   
    

1.18

 

1.18

   

Reg. RNA

 

CPE0845

     

AC1_0990

[7]

virT

 

1.2977

     

1.29

 
  1. Predicted VirR regulons, only genes present in at least two genomes are shown. Numbers below each gene name correspond to the score calculated as described in Methods (on a maximum attainable score of 1.52). As described in the text, most of the known VirR targets belongs to this group. * no open reading frame identified in this region but DNA sequence identical to CPE0920; ** no open reading frame identified in this region but DNA sequence identical to CPF_1074, : draft genomes.