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Table 1 Sources and descriptions of bacteriophage and putative prophage islands (PI) used in this study.

From: Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements

A. Isolated bacteriophages

        

Phage (Acc #)

Source

Description

Size (Mb)

# ORFs

Head diameter (nm)

Tail (length × diameter) (nm)

Plaque diameter (mm)

pfu/mL

φ52237 (NC_007145)

Bp Pasteur 52237

 

37.6

47

55

155 × 23

1.5 - 2.0

3 × 106

φ644-2 (NC_009235)

Bp 644

Australia; disease (ulcer)

48.7

71

60

190 × 9

1.0

3 × 103

φE12-2 (NC_009236)

Bp E12-2

NE Thailand; soil

36.7

50

62

152 × 21

1.5 - 2.0

1 × 101

φE202 (NC_009234)

Bt E202

NE Thailand; soil

35.7

48

65

140 × 21

1.5 - 2.0

2 × 105

φE255 (NC_009237)

Bt E255

central Thailand; soil

37.4

55

64

143 × 21

0.5

2 × 103

B. Inferred prophages

        

Prophage-like island

Source

ORFs

Size (Mb)

# ORFs

Chromosome

Description

  

PI S13-1

Bp S13

BURPSS13_G0002-G0044; BURPSS13_I0965-I0971

38.0

48

I

putative prophage

  

PI S13-2

Bp S13

BURPSS13_T0353-T0354; BURPSS13_K0001-K0007

9.5

9

II

prophage-like

  

PI S13-3

Bp S13

BURPSS13_T0561-T0598

23.4

38

II

prophage-like

  

PI Pasteur-2

Bp Pasteur 6068

BURPSPAST_Y0106-Y0135

42.4

30

I

putative prophage

  

PI Pasteur-3

Bp Pasteur 6068

BURPSPAST_P0245-P0287

60.1

45

I

prophage-like

  

PI 1655-1

Bp 1655

BURPS1655_F0102-F0150

36.9

48

I

putative prophage

  

PI 406E-1

Bp 406E

BURPS406E_K0245-K0264

17.9

20

I

putative prophage

  

PI 406E-2

Bp 406E

BURPS406E_R0182-R0256

62.9

73

I

putative prophage

  

PI 1710b-1

Bp 1710b

BURPS1710B_1505-1536

47.0

32

I

putative prophage

  

PI 1710b-2

Bp 1710b

BURPS1710B_1538-1604

61.1

67

I

putative prophage

  

PI 1710b-3

Bp 1710b

BURPS1710B_3650-3669

63.0

45

I

prophage-like

  

PI 688-1

Bp 668

BURPS668_A2331-A2390

41.1

60

I

prophage-like

  

PI E264-1 (GI1)

Bt E264

BTH_I0091-I0119

49.1

26

I

putative prophage

  

PI E264-2 (GI13)

Bt E264

BTH_II1325-II1368

33.1

41

II

prophage-like

  

PI E264-3 (GI12)

Bt E264

BTH_II1011-II1070

52.0

62

II

putative prophage

  

PI LB400-1

Bx LB400

Bxe_A3036-A3110

53.4

40

I

putative prophage

  

PI CGD1-1

Bmul CGD1

BURMUCGD1_3398-3447

37.7

51

I

putative prophage

  

PI CGD1-2

Bmul CGD1

BURMUCGD1_2149-2203

45.6

56

I

prophage-like

  

PI CGD2-1

Bmul CGD2

BURMUCGD2_1176-1227

36.6

52

I

putative prophage

  

PI CGD2-2

Bmul CGD2

BURMUCGD2_2461-2520

44.6

60

I

prophage-like

  

PI CGD2-3

Bmul CGD2

BURMUCGD2_4590-4656

49.4

67

II

prophage-like

  

PI 17616-1

Bmul ATCC 17616

Bmul_1771-Bmul_1998

236.3

217

I

putative prophage

  

PI 17616-3

Bmul ATCC 17616

Bmul_3828-Bmul_3914

73.0

80

II

prophage-like

  

PI 17616-4

Bmul ATCC 17616

Bmul_4831-Bmul_4876

39.4

44

II

prophage-like

  

GI3 (N/A)

Bp K96243

putative prophage [3]

51.2

31

I

putative prophage

  

GI15 (N/A)

Bp K96243

putative prophage[3]

35.1

38

II

putative prophage

  

C. Published bacteriophages

       

Phage (Acc #)

Source

Description

Size (Mb)

# ORFs

Chromosome

Description

  

Φ1026b (AY453853)

Bp 1026b

Siphoviridae [6]

54.9

83

I (?)

prophage

  

GI2; ΦK96243 (N/A)

Bp K96243

Myoviridae [3]

36.4

45

I

prophage

  

ΦE125 (AF447491)

Bt E125

Siphoviridae [52]

53.4

71

I (?)

prophage

  

BcepMu (AY539836)

B. cenocepacia J2315

Myoviridae (Mu-like) [30]

36.7

53

III

prophage

  

Bcep22 (AY349011)

B. cepacia

Podoviridae

63.9

81

N/A

prophage

  

Bcep781 (AF543311)

B. cepacia

Myoviridae; [30]

48.2

66

N/A

prophage

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