From: Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements
A. Isolated bacteriophages | Â | Â | Â | Â | Â | Â | Â | Â |
---|---|---|---|---|---|---|---|---|
Phage (Acc #) | Source | Description | Size (Mb) | # ORFs | Head diameter (nm) | Tail (length × diameter) (nm) | Plaque diameter (mm) | pfu/mL |
φ52237 (NC_007145) | Bp Pasteur 52237 |  | 37.6 | 47 | 55 | 155 × 23 | 1.5 - 2.0 | 3 × 106 |
φ644-2 (NC_009235) | Bp 644 | Australia; disease (ulcer) | 48.7 | 71 | 60 | 190 × 9 | 1.0 | 3 × 103 |
φE12-2 (NC_009236) | Bp E12-2 | NE Thailand; soil | 36.7 | 50 | 62 | 152 × 21 | 1.5 - 2.0 | 1 × 101 |
φE202 (NC_009234) | Bt E202 | NE Thailand; soil | 35.7 | 48 | 65 | 140 × 21 | 1.5 - 2.0 | 2 × 105 |
φE255 (NC_009237) | Bt E255 | central Thailand; soil | 37.4 | 55 | 64 | 143 × 21 | 0.5 | 2 × 103 |
B. Inferred prophages | Â | Â | Â | Â | Â | Â | Â | Â |
Prophage-like island | Source | ORFs | Size (Mb) | # ORFs | Chromosome | Description | Â | Â |
PI S13-1 | Bp S13 | BURPSS13_G0002-G0044; BURPSS13_I0965-I0971 | 38.0 | 48 | I | putative prophage | Â | Â |
PI S13-2 | Bp S13 | BURPSS13_T0353-T0354; BURPSS13_K0001-K0007 | 9.5 | 9 | II | prophage-like | Â | Â |
PI S13-3 | Bp S13 | BURPSS13_T0561-T0598 | 23.4 | 38 | II | prophage-like | Â | Â |
PI Pasteur-2 | Bp Pasteur 6068 | BURPSPAST_Y0106-Y0135 | 42.4 | 30 | I | putative prophage | Â | Â |
PI Pasteur-3 | Bp Pasteur 6068 | BURPSPAST_P0245-P0287 | 60.1 | 45 | I | prophage-like | Â | Â |
PI 1655-1 | Bp 1655 | BURPS1655_F0102-F0150 | 36.9 | 48 | I | putative prophage | Â | Â |
PI 406E-1 | Bp 406E | BURPS406E_K0245-K0264 | 17.9 | 20 | I | putative prophage | Â | Â |
PI 406E-2 | Bp 406E | BURPS406E_R0182-R0256 | 62.9 | 73 | I | putative prophage | Â | Â |
PI 1710b-1 | Bp 1710b | BURPS1710B_1505-1536 | 47.0 | 32 | I | putative prophage | Â | Â |
PI 1710b-2 | Bp 1710b | BURPS1710B_1538-1604 | 61.1 | 67 | I | putative prophage | Â | Â |
PI 1710b-3 | Bp 1710b | BURPS1710B_3650-3669 | 63.0 | 45 | I | prophage-like | Â | Â |
PI 688-1 | Bp 668 | BURPS668_A2331-A2390 | 41.1 | 60 | I | prophage-like | Â | Â |
PI E264-1 (GI1) | Bt E264 | BTH_I0091-I0119 | 49.1 | 26 | I | putative prophage | Â | Â |
PI E264-2 (GI13) | Bt E264 | BTH_II1325-II1368 | 33.1 | 41 | II | prophage-like | Â | Â |
PI E264-3 (GI12) | Bt E264 | BTH_II1011-II1070 | 52.0 | 62 | II | putative prophage | Â | Â |
PI LB400-1 | Bx LB400 | Bxe_A3036-A3110 | 53.4 | 40 | I | putative prophage | Â | Â |
PI CGD1-1 | Bmul CGD1 | BURMUCGD1_3398-3447 | 37.7 | 51 | I | putative prophage | Â | Â |
PI CGD1-2 | Bmul CGD1 | BURMUCGD1_2149-2203 | 45.6 | 56 | I | prophage-like | Â | Â |
PI CGD2-1 | Bmul CGD2 | BURMUCGD2_1176-1227 | 36.6 | 52 | I | putative prophage | Â | Â |
PI CGD2-2 | Bmul CGD2 | BURMUCGD2_2461-2520 | 44.6 | 60 | I | prophage-like | Â | Â |
PI CGD2-3 | Bmul CGD2 | BURMUCGD2_4590-4656 | 49.4 | 67 | II | prophage-like | Â | Â |
PI 17616-1 | Bmul ATCC 17616 | Bmul_1771-Bmul_1998 | 236.3 | 217 | I | putative prophage | Â | Â |
PI 17616-3 | Bmul ATCC 17616 | Bmul_3828-Bmul_3914 | 73.0 | 80 | II | prophage-like | Â | Â |
PI 17616-4 | Bmul ATCC 17616 | Bmul_4831-Bmul_4876 | 39.4 | 44 | II | prophage-like | Â | Â |
GI3 (N/A) | Bp K96243 | putative prophage [3] | 51.2 | 31 | I | putative prophage | Â | Â |
GI15 (N/A) | Bp K96243 | putative prophage[3] | 35.1 | 38 | II | putative prophage | Â | Â |
C. Published bacteriophages | Â | Â | Â | Â | Â | Â | Â | |
Phage (Acc #) | Source | Description | Size (Mb) | # ORFs | Chromosome | Description | Â | Â |
Φ1026b (AY453853) | Bp 1026b | Siphoviridae [6] | 54.9 | 83 | I (?) | prophage |  |  |
GI2; ΦK96243 (N/A) | Bp K96243 | Myoviridae [3] | 36.4 | 45 | I | prophage |  |  |
ΦE125 (AF447491) | Bt E125 | Siphoviridae [52] | 53.4 | 71 | I (?) | prophage |  |  |
BcepMu (AY539836) | B. cenocepacia J2315 | Myoviridae (Mu-like) [30] | 36.7 | 53 | III | prophage | Â | Â |
Bcep22 (AY349011) | B. cepacia | Podoviridae | 63.9 | 81 | N/A | prophage | Â | Â |
Bcep781 (AF543311) | B. cepacia | Myoviridae; [30] | 48.2 | 66 | N/A | prophage | Â | Â |