Probes | Primers sequence (5'-3') | Description | |
---|---|---|---|
W | 11 | GTTGCGGACGTGTGACTTG | to detect the left extremity of chromosome |
 | 12 | GAACTACATGCCGGGAGTG |  |
aveC | 15 | CAGCAAGGATACGGGGAC | to detect the avermectin biosynthetic gene cluster |
 | 16 | ACCGAGCACGATGCCGATG |  |
G1-139 | 139 | GGTTGACGACGTCCTTGAG | to detect fragment Ase I-G1 |
 | 140 | CGACACTCATGAAGCGACC |  |
G2-152 | 152 | CTGCTCAAGACGAAGGTGC | to detect fragment Ase I-G2 |
 | 153 | CCGTCACATCGCTGTCATG |  |
D600 | 131 | GTGATCGTGAAGACCTCGC | to detect fragment Ase I-D |
 | 132 | CTCCACCATGACAAGACCG |  |
Dr | 19 | AGTCGTACGTCCGCAACTG | to detect the right extremity of chromosome |
 | 20 | AGGTCTTCCGCTTCGCTTC |  |
D20 | 125 | CTCTAGACGGCGGAATCAC | to detect the duplication and translocation of right 88-kb end |
 | 126 | GCGACAAGGGCTAAGACTC |  |
D60 | 96 | GTTCTGGCAGTCGTCGTAG | to detect the duplication and translocation of right 88-kb end |
 | 97 | TGAAGAAGACCCGGTCTGG |  |
D80 | 98 | ACGAACGTGCCCTGCTCAC | to detect the duplication and translocation of right 88-kb end |
 | 99 | GGTGACGAGTTCGGAGACG |  |
N1 | 75 | GGAGGTAGCGGATGTTGTG | to detect the rearrangement event in fragment Ase I-NA1 |
 | 76 | CTGGTCCCAGTACACGATC |  |
N2 | 236 | GGCTCGTTCATCTTCCTCG | to detect the rearrangement event in fragment Ase I-NA2 |
 | 239 | GCACATCAGAGGGTCATGC |  |
N3 | 272 | CGTTGACGTAGAGCTGCG | to detect the rearrangement event in fragment Ase I-NA3 |
 | 248 | ACCTGAGCAGCTCGTGAAG |  |
N4 | 405 | TGTGACGGTGTGCCAGTAG | to detect the rearrangement event in fragment Ase I-NA4 |
 | 406 | ATGCCCTCGACTACGACAC |  |