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Table 1 Primers used for preparation of probes

From: Chromosomal instability in Streptomyces avermitilis: major deletion in the central region and stable circularized chromosome

Probes

Primers sequence (5'-3')

Description

W

11

GTTGCGGACGTGTGACTTG

to detect the left extremity of chromosome

 

12

GAACTACATGCCGGGAGTG

 

aveC

15

CAGCAAGGATACGGGGAC

to detect the avermectin biosynthetic gene cluster

 

16

ACCGAGCACGATGCCGATG

 

G1-139

139

GGTTGACGACGTCCTTGAG

to detect fragment Ase I-G1

 

140

CGACACTCATGAAGCGACC

 

G2-152

152

CTGCTCAAGACGAAGGTGC

to detect fragment Ase I-G2

 

153

CCGTCACATCGCTGTCATG

 

D600

131

GTGATCGTGAAGACCTCGC

to detect fragment Ase I-D

 

132

CTCCACCATGACAAGACCG

 

Dr

19

AGTCGTACGTCCGCAACTG

to detect the right extremity of chromosome

 

20

AGGTCTTCCGCTTCGCTTC

 

D20

125

CTCTAGACGGCGGAATCAC

to detect the duplication and translocation of right 88-kb end

 

126

GCGACAAGGGCTAAGACTC

 

D60

96

GTTCTGGCAGTCGTCGTAG

to detect the duplication and translocation of right 88-kb end

 

97

TGAAGAAGACCCGGTCTGG

 

D80

98

ACGAACGTGCCCTGCTCAC

to detect the duplication and translocation of right 88-kb end

 

99

GGTGACGAGTTCGGAGACG

 

N1

75

GGAGGTAGCGGATGTTGTG

to detect the rearrangement event in fragment Ase I-NA1

 

76

CTGGTCCCAGTACACGATC

 

N2

236

GGCTCGTTCATCTTCCTCG

to detect the rearrangement event in fragment Ase I-NA2

 

239

GCACATCAGAGGGTCATGC

 

N3

272

CGTTGACGTAGAGCTGCG

to detect the rearrangement event in fragment Ase I-NA3

 

248

ACCTGAGCAGCTCGTGAAG

 

N4

405

TGTGACGGTGTGCCAGTAG

to detect the rearrangement event in fragment Ase I-NA4

 

406

ATGCCCTCGACTACGACAC

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